MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	red	green	network_comparison

Results: HTML CSV LaTeX

Showing element 6386 to 6435 of 6456 in total

Value Type  : Measured
Interaction Map  : High confidence
Filtered  : 1

Rank	description	Network Comparison Type	red	green	network_comparison
3193	rab gdp dissociation inhibitor beta (rab gdi beta) (gdi-2). [swissprot;acc:p50395]	Subtracted	0	0	0
3194	muts protein homolog 4. [swissprot;acc:o15457]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3195	integrin beta-3 precursor (platelet membrane glycoprotein iiia) (gpiiia) (cd61 antigen). [swissprot;acc:p05106]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3196	homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein (methyl methanesulfonate (mmf)-inducible fragment protein 1). [swissprot;acc:q15011]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3197	cisplatin resistance related protein crr9p. [refseq;acc:nm_030782]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3198	rp42 homolog; squamous cell carcinoma-related oncogene. [refseq;acc:nm_020640]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3199	complement component c6 precursor. [swissprot;acc:p13671]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3200	endosome-associated fyve-domain protein. [refseq;acc:nm_014733]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3201	recessive polycystic kidney disease protein tg737 homolog. [swissprot;acc:q13099]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3202	ran binding protein 3 isoform ranbp3-d; ran-binding protein-3. [refseq;acc:nm_007322]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3203	high mobility group protein 4 (hmg-4) (high mobility group protein 2a) (hmg-2a). [swissprot;acc:o15347]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3204	vaccinia related kinase 2; vaccinia-related kinase-2. [refseq;acc:nm_006296]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3205	rb1-inducible coiled coil protein 1. [refseq;acc:nm_014781]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3206	protein c20orf43 (hspc164/hspc169) (ad-007) (cda05). [swissprot;acc:q9by42]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3207	complement component c8 beta chain precursor. [swissprot;acc:p07358]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3208	runt-related transcription factor 3 (core-binding factor, alpha 3 subunit) (cbf-alpha 3) (acute myeloid leukemia 2 protein) (oncogene aml-2) (polyomavirus enhancer binding protein 2 alpha c subunit) (pebp2-alpha c) (pea2-alpha c) (sl3-3 enhancer factor 1 alpha c subunit) (sl3/akv core-binding factor alpha c subunit). [swissprot;acc:q13761]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3209	cdk-activating kinase assembly factor mat1 (ring finger protein mat1) (menage a trois) (cdk7/cyclin h assembly factor) (p36) (p35) (cyclin g1 interacting protein). [swissprot;acc:p51948]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3210	trabid protein. [swissprot;acc:q9ugi0]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3211	cytochrome p450 24a1, mitochondrial precursor (ec 1.14.-.-) (p450- cc24) (vitamin d(3) 24-hydroxylase) (1,25-dihydroxyvitamin d(3) 24- hydroxylase) (24-ohase). [swissprot;acc:q07973]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3212	rala binding protein 1; rala-binding protein. [refseq;acc:nm_006788]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3213	malate dehydrogenase, cytoplasmic (ec 1.1.1.37). [swissprot;acc:p40925]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3214	bs4 protein (ny-ren-18 antigen). [swissprot;acc:q9y5a7]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3215	membrane-bound transcription factor site 2 protease (ec 3.4.24.-) (site-2 protease) (sterol-regulatory element-binding proteins intramembrane protease). [swissprot;acc:o43462]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3216	dna excision repair protein ercc-1. [swissprot;acc:p07992]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3217	sex comb on midleg homolog 1. [refseq;acc:nm_012236]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3218	williams-beuren syndrome chromosome region 14 protein (ws basic-helix- loop-helix leucine zipper protein) (ws-bhlh) (mlx interactor). [swissprot;acc:q9np71]	Divided	0.00001	0.00001	1

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.