MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Gene	Rank	description	Network Comparison Type	Value Type	Interaction Map	Filtered	red	green	network_comparison

Results: HTML CSV LaTeX

Showing element 51 to 100 of 2116 in total

Network Comparison Type  : Subtracted
red  : 0
green  : 0
network_comparison  : 0

Rank	description	Value Type	Interaction Map	Filtered
842	gamma-glutamyltranspeptidase 1 precursor (ec 2.3.2.2) (gamma- glutamyltransferase 1) (cd224 antigen). [swissprot;acc:p19440]	Squared	Low confidence	0
		Rooted
843	gamma-glutamyltranspeptidase 5 precursor (ec 2.3.2.2) (gamma- glutamyltransferase 5) (ggt-rel). [swissprot;acc:p36269]	Measured
		Ranked
		Squared
		Rooted
2756	3 beta-hydroxysteroid dehydrogenase (fragments). [sptrembl;acc:q9udk8]	Measured	High confidence	1
		Ranked
		Squared
		Rooted
2757	nucleosome assembly protein 1-like 1 (nap-1 related protein). [swissprot;acc:p55209]	Measured
		Ranked
		Squared
		Rooted
2758	nucleosome assembly protein 1-like 2 (brain-specific protein, x- linked). [swissprot;acc:q9ulw6]	Measured
		Ranked
		Squared
		Rooted
2759	retinoic acid receptor rxr-alpha. [swissprot;acc:p19793]	Measured
		Ranked
		Squared
		Rooted
2760	t-cell acute lymphocytic leukemia-2 protein (tal-2 protein). [swissprot;acc:q16559]	Measured
		Ranked
		Squared
		Rooted
2761	guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [swissprot;acc:q9byb4]	Measured
		Ranked
		Squared
		Rooted
2762	developmentally regulated gtp-binding protein 1 (drg 1). [swissprot;acc:q9y295]	Measured
		Ranked
		Squared
		Rooted
2763	ring finger protein 3. [refseq;acc:nm_006315]	Measured
		Ranked
		Squared
		Rooted
2764	ras-related protein rab-11b (gtp-binding protein ypt3). [swissprot;acc:q15907]	Measured
		Ranked
		Squared
		Rooted
2765	histone h2a.e (h2a/e). [swissprot;acc:q99878]	Measured
		Ranked
		Squared
		Rooted
2766	ss18-like protein 1 (syt homolog-1). [swissprot;acc:o75177]	Measured
		Ranked
		Squared
		Rooted

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.