Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2580 to 2629 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 2580\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent katanin p80 subunit b 1; katanin (80 kda); katanin p80 (wd40-containing) subunit b 1. [source:refseq;acc:nm\_005886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4331.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4252.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01848\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2581\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase ii 19 kda polypeptide (ec 2.7.7.6) (rpb7). [source:swissprot;acc:p52433]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4570.81\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4654.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01841\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2582\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase ii 23 kda polypeptide (ec 2.7.7.6) (rpb25) (xap4) (rpb5) (rpabc1). [source:swissprot;acc:p19388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3899.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3829.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01821\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2583\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polymerase (rna) iii (dna directed) (32kd). [source:refseq;acc:nm\_006467]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3926.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3857.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01776\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2584\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent deformed epidermal autoregulatory factor 1 homolog (nuclear deaf-1 related transcriptional regulator) (nudr) (suppressin) (zinc finger mynd domain containing protein 5). [source:swissprot;acc:o75398]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 4180.32\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 4253.46\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0175\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2585\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rio kinase 1 isoform 1; ad034 protein. [source:refseq;acc:nm\_031480]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2586\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent map/microtubule affinity-regulating kinase 1. [source:refseq;acc:nm\_018650]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2587\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent map/microtubule affinity-regulating kinase 2 isoform b; elkl motif kinase 1; elkl motif kinase. [source:refseq;acc:nm\_004954]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2588\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent meiotic recombination protein spo11. [source:swissprot;acc:q9y5k1]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2589\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent apoptosis inhibitor fksg2. [source:swissprot;acc:q9hau6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7181.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7057.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01747\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2590\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent chromobox protein homolog 5 (heterochromatin protein 1 homolog alpha) (hp1 alpha) (antigen p25). [source:swissprot;acc:p45973]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7551.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7422.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01741\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2591\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent chromobox protein homolog 3 (heterochromatin protein 1 homolog gamma) (hp1 gamma) (modifier 2 protein) (hech). [source:swissprot;acc:q13185]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7550.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7422.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01726\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2592\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent translationally controlled tumor protein (tctp) (p23) (histamine- releasing factor) (hrf). [source:swissprot;acc:p13693]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7169.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7047.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01717\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2593\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exosome complex exonuclease rrp41 (ec 3.1.13.-) (ribosomal rna processing protein 41) (p12a). [source:swissprot;acc:q9npd3]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 4921.84\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5005.06\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.01691\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2594\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exosome complex exonuclease rrp4 (ec 3.1.13.-) (ribosomal rna processing protein 4). [source:swissprot;acc:q13868]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2595\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exosome complex exonuclease rrp40 (ec 3.1.13.-) (ribosomal rna processing protein 40) (p10) (cgi-102). [source:swissprot;acc:q9nqt5]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2596\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exosome complex exonuclease rrp46 (ec 3.1.13.-) (ribosomal rna processing protein 46) (p12b) (chronic myelogenous leukemia tumor antigen 28). [source:swissprot;acc:q9nqt4]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2597\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin-conjugating enzyme e2-17 kda 2 (ec 6.3.2.19) (ubiquitin- protein ligase) (ubiquitin carrier protein) (e2(17)kb 2). [source:swissprot;acc:p51669]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8104.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7970.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01689\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2598\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent chromobox protein homolog 1 (heterochromatin protein 1 homolog beta) (hp1 beta) (modifier 1 protein) (m31) (heterochromatin protein p25). [source:swissprot;acc:p23197]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7538.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7417.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0163\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2599\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alanyl-trna synthetase (ec 6.1.1.7) (alanine--trna ligase) (alars). [source:swissprot;acc:p49588]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4367.69\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4438.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01627\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2600\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dihydrolipoamide dehydrogenase, mitochondrial precursor (ec 1.8.1.4) (glycine cleavage system l protein). [source:swissprot;acc:p09622]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6185\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6283.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01597\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2601\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rad50 homolog isoform 1. [source:refseq;acc:nm\_005732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7222.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7110.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01566\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2602\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lim/homeobox protein lhx3. [source:swissprot;acc:q9ubr4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7571.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7688.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01541\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2603\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lim domain binding 2; lim binding domain 2; lim domain-binding factor-2. [source:refseq;acc:nm\_001290]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7572.69\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7689.04\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.01536\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 2604\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lim domain binding 1; carboxy terminal lim domain protein 2; lim domain-binding factor-1. [source:refseq;acc:nm\_003893]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7572.7\vspace{3pt}}&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2605\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lim/homeobox protein lhx4. [source:swissprot;acc:q969g2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7573.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7689.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01531\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2606\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tyrosyl-trna synthetase (ec 6.1.1.1) (tyrosyl--trna ligase) (tyrrs). [source:swissprot;acc:p54577]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4450.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4517.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01499\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2607\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent stromal interaction molecule 1 precursor. [source:swissprot;acc:q13586]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6476.19\vspace{3pt}}&\multirow{10}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.01498\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2608\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent trap/mediator complex component trap25. [source:refseq;acc:nm\_080651]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6476.18\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2609\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent wd repeat- and fyve domain-containing protein 2; wd40 and fyve domain containing 2. [source:refseq;acc:nm\_052950]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6476.41\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2610\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine-protein kinase pak 4 (ec 2.7.1.-) (p21-activated kinase 4) (pak-4). [source:swissprot;acc:o96013]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6476.19\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2611\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polyposis locus protein 1 (tb2 protein). [source:swissprot;acc:q00765]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6476.18\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2612\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent acyl-coa dehydrogenase, medium-chain specific, mitochondrial precursor (ec 1.3.99.3) (mcad). [source:swissprot;acc:p11310]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6476.19\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2613\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polyposis locus protein 1-like 1; likely ortholog of mouse polyposis locus protein 1-like 1. [source:refseq;acc:nm\_138393]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6476.18\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2614\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent stromal interaction molecule 2 precursor. [source:swissprot;acc:q9p246]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6380.61\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6476.19\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2615\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine-protein kinase pak 7 (ec 2.7.1.-) (p21-activated kinase 7) (pak-7) (pak-5). [source:swissprot;acc:q9p286]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2616\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent wd repeat and fyve domain containing 1 isoform 1; phosphoinositide-binding protein sr1; wd40 and fyve domain containing 1. [source:refseq;acc:nm\_020830]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6380.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6475.92\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2617\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dnaj homolog subfamily b member 4 (heat shock 40 kda protein 1 homolog) (heat shock protein 40 homolog) (hsp40 homolog). [source:swissprot;acc:q9udy4]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5599.85\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5683\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.01485\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2618\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cab2. [source:refseq;acc:nm\_033419]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2619\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dnaj homolog subfamily b member 5 (heat shock protein hsp40-3) (heat shock protein cognate 40) (hsc40) (hsp40-2). [source:swissprot;acc:o75953]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2620\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dnaj homolog subfamily b member 1 (heat shock 40 kda protein 1) (heat shock protein 40) (hsp40) (dnaj protein homolog 1) (hdj-1). [source:swissprot;acc:p25685]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2621\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent eukaryotic peptide chain release factor subunit 1 (erf1) (eukaryotic release factor 1) (tb3-1) (c11 protein). [source:swissprot;acc:p46055]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2622\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent suppressor of actin mutations 2-like isoform b; dj1033b10.5. [source:refseq;acc:nm\_022553]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2623\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 3 beta 1 subunit (beta-adaptin 3a) (ap-3 complex beta-3a subunit) (beta-3a-adaptin). [source:swissprot;acc:o00203]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6815.24\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6916.14\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.01481\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2624\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ny-ren-24 antigen (fragment). [source:sptrembl;acc:q9y5a4]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2625\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 3 beta 2 subunit (beta-adaptin 3b) (ap-3 complex beta-3b subunit) (beta-3b-adaptin) (neuron-specific vesicle coat protein beta-nap). [source:swissprot;acc:q13367]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2626\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent insulin gene enhancer protein isl-1 (islet-1). [source:swissprot;acc:p20663]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7424.26\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7534.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01479\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2627\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin-specific protease otubain 1. [source:refseq;acc:nm\_017670]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7135.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7240.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0147\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2628\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s9. [source:swissprot;acc:p46781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3933.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3877.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0146\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2629\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase ii 14.4 kda polypeptide (ec 2.7.7.6) (rpb6) (rpb14.4) (rpabc2). [source:swissprot;acc:p41584]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4582.38\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4649.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01458\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/