Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2358 to 2407 of 25824 in total 
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
295\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase fyn (ec 2.7.1.112) (p59-fyn) (syn) (slk). [source:swissprot;acc:p06241]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.1064\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
74.1074\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.001\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator-like 1 (ralgds-like 1). [source:swissprot;acc:q9nzl6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
13261.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11017.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.20368\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-2 (dishevelled-2) (dsh homolog 2). [source:swissprot;acc:o14641]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
59.029\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65.9421\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11711\vspace{3pt}}\\\cline{1-2}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
296\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ebp50-pdz interactor of 64 kda (epi64 protein). [source:swissprot;acc:q9bxi6]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
63.0663\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56.4667\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11688\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
grb2-related adaptor protein 2 (gads protein) (growth factor receptor binding protein) (grblg) (grf40 adaptor protein) (grf-40) (grb-2-like protein) (grb2l) (grbx) (p38) (hematopoietic cell-associated adaptor protein grpl) (adapter protein grid) (sh3-sh2-sh3 adaptor mona). [source:swissprot;acc:o75791]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
28896.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
36766.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7870.4\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate d-glucosaminyl  3-o-sulfotransferase 2; heparin-glucosamine 3-o-sulfotransferase. [source:refseq;acc:nm\_006043]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
219.421\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
196.978\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22.443\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l4 isoform a. [source:refseq;acc:nm\_015956]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
241.282\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10294\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear transcription factor y subunit gamma (nf-y protein chain c) (nuclear factor yc) (nf-yc) (ccaat-binding transcription factor subunit c) (cbf-c) (transactivator hsm-1/2). [source:swissprot;acc:q13952]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
3620.77\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4763.34\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1142.57\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase fgr (ec 2.7.1.112) (p55-fgr) (c-fgr). [source:swissprot;acc:p09769]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
66.1064\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
74.1074\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.001\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3a subunit 2 (spliceosome associated protein 62) (sap 62) (sf3a66). [source:swissprot;acc:q15428]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
4911.81\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5909.18\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.20306\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
wiskott-aldrich syndrome protein (wasp). [source:swissprot;acc:p42768]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
28878.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
36783.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27372\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
297\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l7. [source:swissprot;acc:p18124]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
235.727\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
259.984\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1029\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat displacement protein (cdp) (cut-like 1). [source:swissprot;acc:p39880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
28900.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
36762.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7861.8\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat-binding transcription factor subunit b (cbf-b) (nf-y protein chain a) (nf-ya) (caat-box dna binding protein subunit a). [source:swissprot;acc:p23511]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
3620.77\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4763.34\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1142.57\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
krueppel-like factor 5 (intestinal-enriched krueppel-like factor) (colon krueppel-like factor) (transcription factor bteb2) (basic transcription element binding protein 2) (bte-binding protein 2) (gc box binding protein 2). [source:swissprot;acc:q13887]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4911.81\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5909.18\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.20306\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mrna decapping enzyme; histidine triad protein member 5; heat shock-like protein 1. [source:refseq;acc:nm\_014026]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.421\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
196.978\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22.443\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein s6 kinase, 52kda, polypeptide 1; ribosomal protein s6 kinase, 52kd, polypeptide 1. [source:refseq;acc:nm\_012424]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
14247.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18142.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27336\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
short transient receptor potential channel 5 (trpc5) (htrp-5) (htrp5). [source:swissprot;acc:q9ul62]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
63.0663\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56.4667\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11688\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosine-protein kinase abl2 (ec 2.7.1.112) (tyrosine kinase arg). [source:swissprot;acc:p42684]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.1064\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
74.1073\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.0009\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
298\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adrenodoxin, mitochondrial precursor (adrenal ferredoxin) (hepatoredoxin) (ferredoxin 1). [source:swissprot;acc:p10109]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
8268.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9405.85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1137.66\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
calpain 2, large [catalytic] subunit precursor (ec 3.4.22.17) (calcium-activated neutral proteinase) (canp) (m-type) (m-calpain) (millimolar-calpain) (calpain large polypeptide l2). [source:swissprot;acc:p17655]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
268.632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
243.588\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10281\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein cux-2 (cut-like 2) (fragment). [source:swissprot;acc:o14529]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
28901.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
36762.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7860.7\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase abl1 (ec 2.7.1.112) (p150) (c-abl). [source:swissprot;acc:p00519]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
66.1064\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
74.1073\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.0009\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein s6 kinase-like 1. [source:refseq;acc:nm\_031464]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
14247.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18142.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27336\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
squamous cell carcinoma antigen recognized by t cells 1; u4/u6.u5 tri-snrnp-associated 110 kda protein; ige autoantigen; sart1(259) protein; sart1(800) protein. [source:refseq;acc:nm\_005146]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
57.6823\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
64.4212\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11683\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor e2f1 (e2f-1) (retinoblastoma binding protein 3) (rbbp-3) (prb-binding protein e2f-1) (pbr3) (retinoblastoma-associated protein 1) (rbap-1). [source:swissprot;acc:q01094]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.421\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
244.236\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22.185\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm2 (small nuclear ribonuclear protein d homolog) (g7b) (snrnp core sm-like protein sm-x5). [source:swissprot;acc:q9y333]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
4633.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5572.85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.20262\vspace{3pt}}\\\cline{1-2}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
299\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ba395l14.12 (novel protein similar to small nuclear ribonucleoprotein polypeptide a' (snrpa1)). [source:sptrembl;acc:q9nu36]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
4914.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5907.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.20203\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
calpain 1, large [catalytic] subunit (ec 3.4.22.17) (calcium-activated neutral proteinase) (canp) (mu-type) (mucanp) (micromolar-calpain). [source:swissprot;acc:p07384]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
268.635\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
243.592\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10281\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
coatomer beta' subunit (beta'-coat protein) (beta'-cop) (p102). [source:swissprot;acc:p35606]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
51527.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43689.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7838.5\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
grb2-related adaptor protein 2 (gads protein) (growth factor receptor binding protein) (grblg) (grf40 adaptor protein) (grf-40) (grb-2-like protein) (grb2l) (grbx) (p38) (hematopoietic cell-associated adaptor protein grpl) (adapter protein grid) (sh3-sh2-sh3 adaptor mona). [source:swissprot;acc:o75791]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
66.1063\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
74.1068\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.0005\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
metaxin 1. [source:swissprot;acc:q13505]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
9327.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10442.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1114.62\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene c-crk (p38) (adapter molecule crk). [source:swissprot;acc:p46108]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
28896.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
36767\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27238\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-3 (dishevelled-3) (dsh homolog 3). [source:swissprot;acc:q92997]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
59.026\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65.8955\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11638\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor e2f2 (e2f-2). [source:swissprot;acc:q14209]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.421\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
244.236\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22.185\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
300\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
coatomer gamma subunit (gamma-coat protein) (gamma-cop). [source:swissprot;acc:q9y678]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
51527.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43689.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7838.5\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 5 (eif-5). [source:swissprot;acc:p55010]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
43.5479\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
51.5473\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7.9994\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
metalloprotease 1; metalloprotease 1 (pitrilysin family). [source:refseq;acc:nm\_014889]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
150.959\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
166.351\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10196\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mki67 (fha domain) interacting nucleolar phosphoprotein; nucleolar phosphoprotein nopp34; nucleolar protein interacting with the fha domain of pki-67. [source:refseq;acc:nm\_032390]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
48.1584\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
53.7378\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11586\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable atp-dependent 61 kda nucleolar rna helicase (dead-box protein 21). [source:swissprot;acc:q9ny93]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.017\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
234.945\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22.072\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor iiib 90 kda subunit (tfiiib90) (htfiiib90) (b- related factor 1) (hbrf) (tata box-binding protein-associated factor, rna polymerase iii, subunit 2) (taf3b2). [source:swissprot;acc:q92994]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4446.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5553.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1107.07\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosine-protein kinase abl2 (ec 2.7.1.112) (tyrosine kinase arg). [source:swissprot;acc:p42684]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
28896.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
36767\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27238\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein a' (u2 snrnp-a'). [source:swissprot;acc:p09661]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4914.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5907.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.20203\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{7}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
301\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
beta-1,4 mannosyltransferase. [source:refseq;acc:nm\_019109]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
150.982\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
166.372\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10193\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat displacement protein (cdp) (cut-like 1). [source:swissprot;acc:p39880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.1048\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
74.0977\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7.9929\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
coatomer zeta-1 subunit (zeta-1 coat protein) (zeta-1 cop) (cgi-120) (hspc181). [source:swissprot;acc:q9y3c3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
51527.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43689.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7838.5\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cyclin-dependent kinases regulatory subunit 1 (cks-1) (sid1334) (pnas-16 / pnas-143). [source:swissprot;acc:p33551]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
13768.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11466\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.20078\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
203.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
182.638\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11517\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma antigen, family d, 4 isoform 1; mage1 protein; mage-e1 protein; maged4 protein. [source:refseq;acc:nm\_030801]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22.0168\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar protein family a, member 1; gar1 protein. [source:refseq;acc:nm\_018983]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4446.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5553.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1107.07\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/