Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 5514 to 5563 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1379\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
g-rich sequence factor-1 (grsf-1). [source:swissprot;acc:q12849]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.9865\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.4916\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04041\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein s6 kinase alpha 1 (ec 2.7.1.37) (s6k-alpha 1) (90 kda ribosomal protein s6 kinase 1) (p90-rsk 1) (ribosomal s6 kinase 1) (rsk-1) (pp90rsk1). [source:swissprot;acc:q15418]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6555.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tryptophanyl-trna synthetase, mitochondrial precursor (ec 6.1.1.2) (tryptophan--trna ligase) (trprs) ((mt)trprs). [source:swissprot;acc:q9ugm6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22386.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25153.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12363\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1380\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp-binding cassette, sub-family d, member 3 (70 kda peroxisomal membrane protein) (pmp70). [source:swissprot;acc:p28288]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6555.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein h' (hnrnp h') (ftp-3). [source:swissprot;acc:p55795]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.9842\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.489\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04041\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thiamin pyrophosphokinase 1; mouse thiamin pyrophosphokinase homolog; thiamine pyrophosphokinase. [source:refseq;acc:nm\_022445]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22386.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25153.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12363\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin carboxyl-terminal hydrolase 8 (ec 3.1.2.15) (ubiquitin thiolesterase 8) (ubiquitin-specific processing protease 8) (deubiquitinating enzyme 8). [source:swissprot;acc:p40818]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1381\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glutaryl-coa dehydrogenase, mitochondrial precursor (ec 1.3.99.7) (gcd). [source:swissprot;acc:q92947]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6555.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
growth factor receptor-bound protein 2 (grb2 adapter protein) (sh2/sh3 adapter grb2) (ash protein). [source:swissprot;acc:p29354]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29952.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33648.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12337\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein h3 (hnrnp h3) (hnrnp 2h9). [source:swissprot;acc:p31942]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.986\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.4911\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04041\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rod1 regulator of differentiation 1; fission yeast differentiation regulator; regulator of differentiation (in s. pombi) 1; regulator of differentiation (in s. pombe) 1. [source:refseq;acc:nm\_005156]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1382\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histidine ammonia-lyase (ec 4.3.1.3) (histidase). [source:swissprot;acc:p42357]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6555.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear factor, interleukin 3 regulated. [source:refseq;acc:nm\_005384]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.1214\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.6707\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04039\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polypyrimidine tract binding protein 2; neural polypyrimidine tract binding protein; ptb-like protein. [source:refseq;acc:nm\_021190]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine-protein kinase nek2 (ec 2.7.1.37) (nima-related protein kinase 2) (nima-like protein kinase 1) (hspk 21). [source:swissprot;acc:p51955]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29952.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33648.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12337\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1383\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adaptor-associated kinase 1. [source:refseq;acc:nm\_014911]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
malate dehydrogenase, mitochondrial precursor (ec 1.1.1.37). [source:swissprot;acc:p40926]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53.5945\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
51.5157\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04035\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
proliferating cell nuclear antigen (pcna) (cyclin). [source:swissprot;acc:p12004]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20766.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23326.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12326\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein s6 kinase alpha 6 (ec 2.7.1.37) (s6k-alpha 6) (90 kda ribosomal protein s6 kinase 6) (p90-rsk 6) (ribosomal s6 kinase 4) (rsk-4) (pp90rsk4). [source:swissprot;acc:q9uk32]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6555.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1384\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atrophin-1 (dentatorubral-pallidoluysian atrophy protein). [source:swissprot;acc:p54259]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.471\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycine cleavage system h protein, mitochondrial precursor. [source:swissprot;acc:p23434]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25044.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28129.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12316\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
immature colon carcinoma transcript 1 (digestion substraction 1) (ds- 1). [source:swissprot;acc:q14197]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.7706\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.219\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04029\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein s6 kinase alpha 2 (ec 2.7.1.37) (s6k-alpha 2) (90 kda ribosomal protein s6 kinase 2) (p90-rsk 2) (ribosomal s6 kinase 3) (rsk-3) (pp90rsk3). [source:swissprot;acc:q15349]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6079.45\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
6555.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1385\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium/calmodulin-dependent protein kinase type ii alpha chain (ec 2.7.1.123) (cam-kinase ii alpha chain) (cam kinase ii alpha subunit) (camk-ii alpha subunit). [source:swissprot;acc:q9uqm7]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
candidate tumor suppressor in ovarian cancer 2. [source:refseq;acc:nm\_080822]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19622\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
22037.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12311\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dead (asp-glu-ala-asp) box polypeptide 47; hqp0256 protein. [source:refseq;acc:nm\_016355]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.875\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dimethylaniline monooxygenase [n-oxide forming] 5 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 5) (fmo 5) (dimethylaniline oxidase 5). [source:swissprot;acc:p49326]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.9624\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.4098\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04015\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1386\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium/calmodulin-dependent protein kinase type ii beta chain (ec 2.7.1.123) (cam-kinase ii beta chain) (cam kinase ii beta subunit) (camk-ii beta subunit). [source:swissprot;acc:q13554]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6555.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
early endosome antigen 1, 162kd; early endosome-associated protein. [source:refseq;acc:nm\_003566]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19367.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21747.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12286\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative dimethylaniline monooxygenase [n-oxide forming] 6 (ec 1.14.13.8) (flavin-containing monooxygenase 6) (fmo 6) (dimethylaniline oxidase 6). [source:swissprot;acc:o60774]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.9624\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.4098\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04015\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rho-gtpase activating protein 10. [source:refseq;acc:nm\_020824]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1387\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
c-1-tetrahydrofolate synthase, cytoplasmic (c1-thf synthase) [includes: methylenetetrahydrofolate dehydrogenase (ec 1.5.1.5); methenyltetrahydrofolate cyclohydrolase (ec 3.5.4.9); formyltetrahydrofolate synthetase (ec 6.3.4.3)]. [source:swissprot;acc:p11586]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19336.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21711.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12282\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase kinase kinase 5 (ec 2.7.1.-) (mapk/erk kinase kinase 5) (mek kinase 5) (mekk 5) (apoptosis signal- regulating kinase 1) (ask-1). [source:swissprot;acc:q99683]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6555.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
o-sialoglycoprotein endopeptidase. [source:refseq;acc:nm\_017807]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.3917\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.8083\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04002\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sal-like protein 1 (zinc finger protein sall1) (spalt-like transcription factor 1) (hsal1). [source:swissprot;acc:q9nsc2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.875\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1388\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dimethylaniline monooxygenase [n-oxide forming] 3 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 3) (fmo 3) (dimethylaniline oxidase 3) (fmo form 2) (fmo ii). [source:swissprot;acc:p31513]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.9652\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.4052\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04002\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit-like protein 12.3 (p205) (receptor of activated protein kinase c 1) (rack1) (receptor for activated c kinase). [source:swissprot;acc:p25388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18314.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20563\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12279\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lin-7 homolog b; lin-7b protein; likely ortholog of mouse lin-7b; mammalian lin-7 protein 2; likely orholog of mouse lin 7 homolog b (c. elegans). [source:refseq;acc:nm\_022165]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5743.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6192.94\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07827\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sal-like protein 4 (zinc finger protein sall4). [source:swissprot;acc:q9ujq4]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.471\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1389\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
2-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor (ec 1.2.4.4) (branched-chain alpha-keto acid dehydrogenase e1 component beta chain) (bckdh e1-beta). [source:swissprot;acc:p21953]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.875\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ba305p22.3 (breast carcinoma amplified sequence 4). [source:sptrembl;acc:q8ndy6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
93.3148\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
89.7311\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03994\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase 1 (ec 2.7.1.37) (extracellular signal-regulated kinase 2) (erk-2) (mitogen-activated protein kinase 2) (map kinase 2) (mapk 2) (p42-mapk) (ert1). [source:swissprot;acc:p28482]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6079.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6554.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07825\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zuotin related factor-1 (m-phase phosphoprotein 11). [source:swissprot;acc:q99543]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18314.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20563\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12279\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1390\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ccr4-not transcription complex, subunit 4; not4 (negative regulator of transcription 4, yeast) homolog; ccr4-not transcription complex, subunit. [source:refseq;acc:nm\_013316]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.875\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02148\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dimethylaniline monooxygenase [n-oxide forming] 2 (ec 1.14.13.8) (pulmonary flavin-containing monooxygenase 2) (fmo 2) (dimethylaniline oxidase 2) (fmo 1b1). [source:swissprot;acc:q99518]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.967\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.4023\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03994\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nf-kappab inhibitor epsilon (nf-kappa-bie) (i-kappa-b-epsilon) (ikappabepsilon) (ikb-epsilon) (ikbe). [source:swissprot;acc:o00221]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50724.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45178.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12275\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
receptor protein-tyrosine kinase erbb-4 precursor (ec 2.7.1.112) (p180erbb4) (tyrosine kinase-type cell surface receptor her4). [source:swissprot;acc:q15303]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5743.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6192.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07824\vspace{3pt}}\\\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1391\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dimethylaniline monooxygenase [n-oxide forming] 1 (ec 1.14.13.8) (fetal hepatic flavin-containing monooxygenase 1) (fmo 1) (dimethylaniline oxidase 1). [source:swissprot;acc:q01740]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.9674\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.4016\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03993\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
epidermal growth factor receptor precursor (ec 2.7.1.112) (receptor protein-tyrosine kinase erbb-1). [source:swissprot;acc:p00533]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5743.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6192.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07824\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
estradiol 17 beta-dehydrogenase 4 (ec 1.1.1.62) (17-beta-hsd 4) (17-beta-hydroxysteroid dehydrogenase 4). [source:swissprot;acc:p51659]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26751.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30026.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12242\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/