MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	green	red	network_comparison

Results: HTML CSV LaTeX

Showing element 1851 to 1900 of 6456 in total

Value Type  : Ranked
Interaction Map  : High confidence
Filtered  : 1

Rank	description	Network Comparison Type	green	red	network_comparison
926	imp2 inner mitochondrial membrane protease-like; inner mitochondrial membrane peptidase 2 like. [refseq;acc:nm_032549]	Divided	210.139	217.942	1.03713
	ponsin; sh3-domain protein 5 (ponsin). [refseq;acc:nm_015385]	Subtracted	205.292	212.952	7.66
927	microsomal signal peptidase 18 kda subunit (ec 3.4.-.-) (spase 18 kda subunit) (spc18) (endopeptidase sp18). [swissprot;acc:p21378]	Divided	210.139	217.942	1.03713
	splicing factor 3a subunit 3 (spliceosome associated protein 61) (sap 61) (sf3a60). [swissprot;acc:q12874]	Subtracted	212.618	220.246	7.628
928	peptide chain release factor 1, mitochondrial precursor (mrf-1). [swissprot;acc:o75570]	Divided	218.017	225.976	1.03651
	splicing factor 3 subunit 1 (spliceosome associated protein 114) (sap 114) (sf3a120). [swissprot;acc:q15459]	Subtracted	212.618	220.246	7.628
929	apoptosis antagonizing transcription factor. [refseq;acc:nm_012138]		235.422	243.045	7.623
	mannose-p-dolichol utilization defect 1 protein (suppressor of lec15 and lec35 glycosylation mutation homolog) (sl15). [swissprot;acc:o75352]	Divided	218.015	225.955	1.03642
930	programmed cell death protein 5 (tfar19 protein) (tf-1 cell apoptosis related gene-19 protein). [swissprot;acc:o14737]	Subtracted	225.782	233.402	7.62
	pyruvate kinase, m1 isozyme (ec 2.7.1.40) (pyruvate kinase muscle isozyme) (cytosolic thyroid hormone-binding protein) (cthbp) (thbp1). [swissprot;acc:p14618]	Divided	239.778	231.357	1.0364
931	ba305p22.3 (breast carcinoma amplified sequence 4). [sptrembl;acc:q8ndy6]		164.917	159.13	1.03637
	prefoldin subunit 5 (c-myc binding protein mm-1) (myc modulator 1). [swissprot;acc:q99471]	Subtracted	221.421	228.953	7.532
932	mitochondrial translational release factor 1-like. [refseq;acc:nm_019041]	Divided	218.013	225.939	1.03636
	prefoldin subunit 6 (protein ke2). [swissprot;acc:o15212]	Subtracted	221.421	228.953	7.532
933	basic helix-loop-helix domain containing, class b, 5; trinucleotide repeat containing 20. [refseq;acc:nm_152414]	Divided	164.951	159.165	1.03635
	probable ribosome biogenesis protein nep1 (c2f protein). [swissprot;acc:q92979]	Subtracted	235.518	242.978	7.46
934	nucleolar rna-associated protein alpha isoform. [refseq;acc:nm_022917]	Divided	233.544	242.024	1.03631
	target of myb protein 1. [swissprot;acc:o60784]	Subtracted	209.824	217.254	7.43
935	huntingtin-associated protein-interacting protein (duo protein). [swissprot;acc:o60229]		209.826	217.253	7.427
	sirtuin 7; sir2-related protein type 7; sirtuin type 7; sirtuin (silent mating type information regulation 2, s.cerevisiae, homolog) 7; silent mating type information regulation 2, s.cerevisiae, homolog 7; sirtuin silent mating type information regulation 2 homolog 7 (s. cerevisiae). [refseq;acc:nm_016538]	Divided	224.372	232.473	1.03611
936	casein kinase ii beta chain (ck ii) (phosvitin) (g5a). [swissprot;acc:p13862]
	triple functional domain protein (ptprf interacting protein). [swissprot;acc:o75962]	Subtracted	209.827	217.253	7.426
937	splicing factor 3a subunit 3 (spliceosome associated protein 61) (sap 61) (sf3a60). [swissprot;acc:q12874]	Divided	212.618	220.246	1.03588
	target of myb1-like 2; target of myb1 (chicken) homolog-like 2. [refseq;acc:nm_144678]	Subtracted	209.83	217.252	7.422
938	sorcin (22 kda protein) (cp-22) (v19). [swissprot;acc:p30626]		205.087	212.442	7.355
	splicing factor 3 subunit 1 (spliceosome associated protein 114) (sap 114) (sf3a120). [swissprot;acc:q15459]	Divided	212.618	220.246	1.03588
939	breast cancer type 1 susceptibility protein. [swissprot;acc:p38398]		224.27	216.501
	brg1-binding protein eld/osa1; eld (eyelid)/osa protein. [refseq;acc:nm_020732]	Subtracted	205.085	212.44	7.355
940	calcium-dependent protease, small subunit (calpain regulatory subunit) (calcium-activated neutral proteinase) (canp). [swissprot;acc:p04632]	Divided	205.088	212.442	1.03586
		Subtracted			7.354
941	swi/snf-related, matrix-associated, actin-dependent regulator of chromatin subfamily f member 1 (swi-snf complex protein p270) (b120). [swissprot;acc:o14497]	Divided	205.083	212.437	1.03586
		Subtracted			7.354
942	grancalcin. [swissprot;acc:p28676]	Divided	205.088	212.442	1.03586
		Subtracted			7.354
943	programmed cell death protein 6 (probable calcium-binding protein alg- 2). [swissprot;acc:o75340]		205.083	212.437
	sorcin (22 kda protein) (cp-22) (v19). [swissprot;acc:p30626]	Divided	205.087	212.442	1.03586
944	arg/abl-interacting protein 2 isoform 2; arg binding protein 2. [refseq;acc:nm_021069]	Subtracted	205.191	212.51	7.319
	programmed cell death protein 6 (probable calcium-binding protein alg- 2). [swissprot;acc:o75340]	Divided	205.083	212.437	1.03586
945	brg1-binding protein eld/osa1; eld (eyelid)/osa protein. [refseq;acc:nm_020732]		205.085	212.44
	dihydropyrimidine dehydrogenase [nadp+] precursor (ec 1.3.1.2) (dpd) (dhpdhase) (dihydrouracil dehydrogenase) (dihydrothymine dehydrogenase). [swissprot;acc:q12882]	Subtracted	221.823	229.116	7.293
946	dynein intermediate chain 2, cytosolic (dh ic-2) (cytoplasmic dynein intermediate chain 2). [swissprot;acc:q13409]		218.271	225.557	7.286
	histone h4. [swissprot;acc:p02304]	Divided	219.902	227.765	1.03576
947	arg/abl-interacting protein 2 isoform 2; arg binding protein 2. [refseq;acc:nm_021069]		205.191	212.51	1.03567
	stem cell growth factor; lymphocyte secreted c-type lectin; lymphocyte secreted c-type lectin. [refseq;acc:nm_002975]	Subtracted	170.499	177.776	7.277
948	sprouty homolog 4 (spry-4). [swissprot;acc:q9c004]		217.922	225.167	7.245
	target of myb protein 1. [swissprot;acc:o60784]	Divided	209.824	217.254	1.03541
949	huntingtin-associated protein-interacting protein (duo protein). [swissprot;acc:o60229]		209.826	217.253	1.0354
	sprouty homolog 3 (spry-3). [swissprot;acc:o43610]	Subtracted	217.922	225.167	7.245
950	dna-repair protein complementing xp-g cells (xeroderma pigmentosum group g complementing protein) (dna excision repair protein ercc-5). [swissprot;acc:p28715]	Divided	261.821	252.873	1.03539
	sprouty homolog 1 (spry-1) (fragment). [swissprot;acc:o43609]	Subtracted	217.922	225.167	7.245

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.