Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 168 to 217 of 6456 in total
Value Type: Ranked
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.14285714285714\textwidth} \def\wcB{0.14285714285714\textwidth} \def\wcC{0.14285714285714\textwidth} \def\wcD{0.14285714285714\textwidth} \def\wcE{0.14285714285714\textwidth} \def\wcF{0.14285714285714\textwidth} \begin{longtable}{|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 84\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent homer, neuronal immediate early gene, 3. [source:refseq;acc:nm\_004838]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 252.296\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 201.995\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 50.301\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 85\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 3 (mage-3 antigen) (antigen mz2-d). [source:swissprot;acc:p43357]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent sad1/unc-84 protein-like 1. [source:swissprot;acc:o94901]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 296.677\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 247.559\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 49.118\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 86\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent dgcr14 protein (digeorge syndrome critical region 14) (es2 protein). [source:swissprot;acc:q96df8]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 335\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 286\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 49\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 11 (mage-11 antigen). [source:swissprot;acc:p43364]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 87\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent chromosome 3p21.1 gene sequence. [source:refseq;acc:nm\_013286]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 2 (mage-2 antigen). [source:swissprot;acc:p43356]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 88\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent hepatocellular carcinoma-associated protein hca1. [source:refseq;acc:nm\_020932]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent regulator of g-protein signaling 19 (rgs19) (g-alpha interacting protein) (gaip protein). [source:swissprot;acc:p49795]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 89\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 6 (mage-6 antigen) (mage3b). [source:swissprot;acc:p43360]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent putative rna-binding protein 15 (rna binding motif protein 15) (one-twenty two protein). [source:swissprot;acc:q96t37]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 90\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent necdin. [source:swissprot;acc:q99608]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent regulator of g-protein signaling 20 (rgs20) (regulator of gz- selective protein signaling 1) (gz-selective gtpase-activating protein) (g(z)gap). [source:swissprot;acc:o76081]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 91\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen d1 (mage-d1 antigen) (neurotrophin receptor-interacting mage homolog) (pro2292). [source:swissprot;acc:q9y5v3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent transcription factor lbx1. [source:swissprot;acc:p52954]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 92\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen f1 (mage-f1 antigen). [source:swissprot;acc:q9hay2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent mosaic protein lgn. [source:swissprot;acc:p81274]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 93\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma antigen, family b, 6. [source:refseq;acc:nm\_173523]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent regulator of g-protein signaling 17 (rgs17). [source:swissprot;acc:q9ugc6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 94\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(o), alpha subunit 1. [source:swissprot;acc:p09471]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [source:swissprot;acc:p43358]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 95\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 9 (mage-9 antigen). [source:swissprot;acc:p43362]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent rap1 gtpase-activating protein 1 (rap1gap). [source:swissprot;acc:p47736]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.263\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.6\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 96\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cyclic-amp-dependent transcription factor atf-3 (activating transcription factor 3). [source:swissprot;acc:p18847]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 201.949\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 153.671\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 48.278\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 8 (mage-8 antigen). [source:swissprot;acc:p43361]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 97\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent amyloid beta a4 precursor protein-binding family a member 1 (neuron- specific x11 protein) (neuronal munc18-1-interacting protein 1) (mint-1) (adapter protein x11alpha). [source:swissprot;acc:q02410]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 271.752\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 225.68\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 46.072\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [source:swissprot;acc:o60732]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 98\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [source:swissprot;acc:p43365]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene protein c-fos (cellular oncogene fos) (g0/g1 switch regulatory protein 7). [source:swissprot;acc:p01100]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 204.641\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 160.957\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 43.684\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 99\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent jun dimerization protein. [source:refseq;acc:nm\_130469]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [source:swissprot;acc:p43355]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 100\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent fos-related antigen 2. [source:swissprot;acc:p15408]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 204.641\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 161.046\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43.595\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 10 (mage-10 antigen). [source:swissprot;acc:p43363]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 101\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [source:swissprot;acc:p43366]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent protein fosb (g0/g1 switch regulatory protein 3). [source:swissprot;acc:p53539]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 204.641\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 161.051\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43.59\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 102\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent fos-related antigen 1 (fra-1). [source:swissprot;acc:p15407]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 204.642\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 161.068\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43.574\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen d2 (mage-d2 antigen) (breast cancer associated gene 1 protein) (bcg-1) (11b6) (hepatocellular carcinoma associated protein jcl-1). [source:swissprot;acc:q9unf1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 103\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription factor jun-b. [source:swissprot;acc:p17275]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 201.144\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 158.868\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 42.276\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent trophinin. [source:swissprot;acc:q12816]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24949\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 104\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent homer, neuronal immediate early gene, 2; homer homolog 3 (drosophila). [source:refseq;acc:nm\_004839]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 252.371\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 202.016\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24926\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent tar dna-binding protein-43 (tdp-43). [source:swissprot;acc:q13148]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 256.228\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 298.438\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 42.21\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 105\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 1 (transducin beta chain 1). [source:swissprot;acc:p04901]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 266.716\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 333.165\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24914\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent transcription factor jun-d. [source:swissprot;acc:p17535]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 200.941\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 158.941\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 42\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 106\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent nostrin. [source:refseq;acc:nm\_052946]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 209.299\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 249.187\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 39.888\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent ubiquinone biosynthesis protein coq7 homolog (coenzyme q biosynthesis protein 7 homolog) (timing protein clk-1 homolog). [source:swissprot;acc:q99807]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 252.329\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 202.004\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24913\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 107\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent eap30 subunit of ell complex. [source:refseq;acc:nm\_007241]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 209.299\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 249.187\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 39.888\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent homer, neuronal immediate early gene, 1b. [source:refseq;acc:nm\_004272]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 252.309\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 201.998\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24907\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 108\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent homer, neuronal immediate early gene, 3. [source:refseq;acc:nm\_004838]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 252.296\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 201.995\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.24902\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent liv-1 protein, estrogen regulated. [source:refseq;acc:nm\_012319]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 209.299\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 249.187\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 39.888\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 109\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glutamate decarboxylase, 65 kda isoform (ec 4.1.1.15) (gad-65) (65 kda glutamic acid decarboxylase). [source:swissprot;acc:q05329]\vspace{3pt}}&&&&\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/