Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1508 to 1557 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1508\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent guanine deaminase (ec 3.5.4.3) (guanase) (guanine aminase) (guanine aminohydrolase) (gah) (p51-nedasin). [source:swissprot;acc:q9y2t3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6152.78\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6610.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07439\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1509\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent acetyl-coa carboxylase 2 (ec 6.4.1.2) (acc-beta) [includes: biotin carboxylase (ec 6.3.4.14)]. [source:swissprot;acc:o00763]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7237.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7775.21\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07431\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1510\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l21. [source:swissprot;acc:p46778]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5546.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5957.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07426\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1511\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine protein phosphatase 6 (ec 3.1.3.16) (pp6). [source:swissprot;acc:o00743]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 7234.61\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7771.58\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07422\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1512\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent sporulation-induced transcript 4-associated protein. [source:refseq;acc:nm\_018312]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1513\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit beta type 10 precursor (ec 3.4.25.1) (proteasome mecl-1) (macropain subunit mecl-1) (multicatalytic endopeptidase complex subunit mecl-1). [source:swissprot;acc:p40306]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6079.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6530.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07421\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1514\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent acetyl-coa carboxylase 1 (ec 6.4.1.2) (acc-alpha) [includes: biotin carboxylase (ec 6.3.4.14)]. [source:swissprot;acc:q13085]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7232.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7768.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07414\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1515\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lanc lantibiotic synthetase component c-like 2; testis-specific adriamycin sensitivity protein; lanc (bacterial lantibiotic synthetase component c)-like 2; g protein-coupled receptor 69b. [source:refseq;acc:nm\_018697]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5633.67\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6050.69\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07402\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1516\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lanthionine synthetase c-like protein 1; g protein-coupled receptor 69a; lanc (bacterial lantibiotic synthetase component c)-like 1; lanc (bacterial lantibiotic synthetase component). [source:refseq;acc:nm\_006055]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1517\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 9 (26s proteasome regulatory subunit p27). [source:swissprot;acc:o00233]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5996.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6439.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07393\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1518\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent anaphase-promoting complex subunit 2; anaphase-promoting complex 2. [source:refseq;acc:nm\_013366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 10341.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9630.35\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07381\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1519\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent gdp-mannose pyrophosphorylase b isoform 1; mannose-1-phosphate guanylyltransferase; amphoterin induced gene 3. [source:refseq;acc:nm\_013334]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5283.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5673.81\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1520\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent gdp-mannose pyrophosphorylase a; mannose-1-phosphate guanylyltransferase (gdp). [source:refseq;acc:nm\_013335]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1521\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit 4 (p26s4). [source:swissprot;acc:q03527]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5938.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6376.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07379\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1522\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycerol kinase, testis specific 1 (ec 2.7.1.30) (atp:glycerol 3- phosphotransferase) (glycerokinase) (gk). [source:swissprot;acc:q14409]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6137.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6589.72\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07373\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1523\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycerol kinase (ec 2.7.1.30) (atp:glycerol 3-phosphotransferase) (glycerokinase) (gk). [source:swissprot;acc:p32189]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6137.09\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6589.57\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1524\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycerol kinase, testis specific 2 (ec 2.7.1.30) (atp:glycerol 3- phosphotransferase) (glycerokinase) (gk). [source:swissprot;acc:q14410]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6137.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6590.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07372\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1525\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tensin. [source:refseq;acc:nm\_022648]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5871.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6303.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07351\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1526\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent calreticulin precursor (crp55) (calregulin) (hacbp) (erp60). [source:swissprot;acc:p27797]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5369.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5763.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0735\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1527\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit 6a (tat-binding protein 1) (tbp-1) (proteasome subunit p50). [source:swissprot;acc:p17980]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5926.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6362.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07349\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1528\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent c1 domain-containing phosphatase and tensin-like protein isoform 2; putative protein tyrosine phosphatase; c1 domain-containing phosphatase and tensin-like protein; tensin 2. [source:refseq;acc:nm\_015319]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5869.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6301.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07347\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1529\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna fragmentation factor 40 kda subunit (ec 3.-.-.-) (dff-40) (caspase-activated deoxyribonuclease) (caspase-activated dnase) (cad) (caspase-activated nuclease) (cpan). [source:swissprot;acc:o76075]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5916.05\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6350.53\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07344\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1530\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adamts-9 precursor (ec 3.4.24.-) (a disintegrin and metalloproteinase with thrombospondin motifs 9) (adam-ts 9) (adam-ts9). [source:swissprot;acc:q9p2n4]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1531\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna fragmentation factor alpha subunit (dna fragmentation factor 45 kda subunit) (dff-45) (inhibitor of cad) (icad). [source:swissprot;acc:o00273]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1532\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ankyrin 3 (ank-3) (ankyrin g). [source:swissprot;acc:q12955]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1533\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ankyrin 2 (brain ankyrin) (ankyrin b) (ankyrin, nonerythroid). [source:swissprot;acc:q01484]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1534\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adp-ribosylation factor-like protein 3. [source:swissprot;acc:p36405]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1535\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent unc-119 protein homolog (retinal protein 4) (hrg4). [source:swissprot;acc:q13432]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1536\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 8 (26s proteasome regulatory subunit s14) (p31). [source:swissprot;acc:p48556]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1537\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent evolutionarily conserved signaling intermediate in toll pathway; ecsit. [source:refseq;acc:nm\_016581]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6184.27\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6637.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07328\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1538\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tumor endothelial marker 6; thyroid specific ptb domain protein; tensin 3. [source:refseq;acc:nm\_022748]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5870.72\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6300.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07326\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1539\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit 7 (mss1 protein). [source:swissprot;acc:p35998]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5783.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6207.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07322\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1540\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mms19-like (met18 homolog, s. cerevisiae); homolog of yeast mms19; mms19 (met18 s. cerevisiae)-like. [source:refseq;acc:nm\_022362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6360.13\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6825.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07315\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1541\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenylyl cyclase-associated protein 1 (cap 1). [source:swissprot;acc:q01518]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5989.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6427.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07311\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1542\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent inositol polyphosphate multikinase. [source:refseq;acc:nm\_152230]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5466\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5865.33\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07306\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1543\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent afg3-like protein 2 (ec 3.4.24.-) (paraplegin-like protein). [source:swissprot;acc:q9y4w6]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1544\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alpha-(1,6)-fucosyltransferase (ec 2.4.1.68) (glycoprotein 6-alpha-l- fucosyltransferase) (gdp-fucose--glycoprotein fucosyltransferase) (gdp-l-fuc:n-acetyl-beta-d-glucosaminide alpha1,6-fucosyltransferase) (alpha1-6fuct) (fucosyltransferase 8). [source:swissprot;acc:q9byc5]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1545\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent aminomethyltransferase, mitochondrial precursor (ec 2.1.2.10) (glycine cleavage system t protein) (gcvt). [source:swissprot;acc:p48728]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5945.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6380.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07304\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1546\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 3 (26s proteasome regulatory subunit s3) (proteasome subunit p58). [source:swissprot;acc:o43242]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5819.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6244.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07303\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1547\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cytidine deaminase (ec 3.5.4.5) (cytidine aminohydrolase). [source:swissprot;acc:p32320]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5397.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5790.45\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07286\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1548\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l28. [source:swissprot;acc:p46779]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5987.29\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6423.52\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1549\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glucose-6-phosphate 1-dehydrogenase (ec 1.1.1.49) (g6pd). [source:swissprot;acc:p11413]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6025.86\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6464.16\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07274\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1550\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-repair protein xrcc3 (x-ray repair cross-complementing protein 3). [source:swissprot;acc:o43542]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1551\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cleavage and polyadenylation specific factor 6, 68 kd subunit; pre-mrna cleavage factor im (68kd); cleavage and polyadenylation specific factor 6, 68kd subunit; pre-mrna cleavage factor i, 68kd subunit. [source:refseq;acc:nm\_007007]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5732.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6149.86\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1552\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp-dependent dna helicase q5 (recq protein-like 5) (recq5). [source:swissprot;acc:o94762]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6025.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6464.16\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1553\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secreted modular calcium-binding protein 1. [source:refseq;acc:nm\_022137]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5875.75\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6302.76\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07267\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1554\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent prefoldin subunit 1. [source:swissprot;acc:o60925]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1555\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secreted modular calcium-binding protein 2; smooth muscle associated protein 2. [source:refseq;acc:nm\_022138]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1556\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent choline dehydrogenase. [source:refseq;acc:nm\_018397]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1557\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vacuolar protein sorting 18 (hvps18). [source:swissprot;acc:q9p253]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6018.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6455.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07261\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/