MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Gene	description	Rank	Value Type	Network Comparison Type	Filtered	Interaction Map	red	network_comparison	green

Results: HTML CSV LaTeX

Showing element 151 to 200 of 7460 in total

Value Type  : Measured
Interaction Map  : High confidence

description	Rank	Network Comparison Type	Filtered	red	network_comparison	green
40s ribosomal protein s16. [swissprot;acc:p17008]	2448	Divided	1	3730.53	1.03309	3611.05
	2528	Subtracted			119.48
40s ribosomal protein s18 (ke-3) (ke3). [swissprot;acc:p25232]	2437	Divided		3708.67	1.03465	3584.47
	2521	Subtracted			124.2
40s ribosomal protein s19. [swissprot;acc:p39019]	807	Divided		4708.61	1.11003	5226.71
	1099	Subtracted			518.1
40s ribosomal protein s2 (s4) (llrep3 protein). [swissprot;acc:p15880]	143		0	1499.4	235.83	1735.23
	222	Divided			1.15728
	2242		1	3670.45	1.04723	3504.91
	2450	Subtracted			165.54
40s ribosomal protein s20. [swissprot;acc:p17075]	2211	Divided		3590.56	1.04907	3422.6
	2436	Subtracted			167.96
40s ribosomal protein s21. [swissprot;acc:p35265]	2374			5078.5	197.26	5275.76
	2403	Divided			1.03884
40s ribosomal protein s23. [swissprot;acc:p39028]	2152			3560.63	1.05302	3381.34
	2416	Subtracted			179.29
40s ribosomal protein s24 (s19). [swissprot;acc:p16632]	1599	Divided		5184.45	1.07147	5554.97
	1860	Subtracted			370.52
40s ribosomal protein s26. [swissprot;acc:p02383]	58	Divided	0	150.741	1.85588	81.2233
	323	Subtracted			69.5177
	1655	Divided	1	5488.7	1.06953	5131.89
	1937	Subtracted			356.81
40s ribosomal protein s27 (metallopan-stimulin 1) (mps-1). [swissprot;acc:p42677]	352		0	2431.87	52.88	2378.99
	444	Divided			1.02223
	2126		1	4806.33	1.05422	5066.92
	2253	Subtracted			260.59
40s ribosomal protein s28. [swissprot;acc:p25112]	385	Divided	0	387.486	1.04615	405.367
	430	Subtracted			17.881
	483		1	7161.14	854.78	8015.92
	700	Divided			1.11936
40s ribosomal protein s29. [swissprot;acc:p30054]	176	Subtracted	0	1711.6	183.78	1895.38
	297	Divided			1.10737
	1756		1	3582.57	1.067	3357.6
	2337	Subtracted			224.97
40s ribosomal protein s3. [swissprot;acc:p23396]	2235	Divided		3674.29	1.04736	3508.13
	2440	Subtracted			166.16
40s ribosomal protein s30. [swissprot;acc:q05472]	1071			5893.97	522.1	6416.07
	1145	Divided			1.08858
40s ribosomal protein s3a. [swissprot;acc:p49241]	363	Subtracted	0	2929.51	49.96	2879.55
	447	Divided			1.01735
	2263		1	4918.64	1.0461	5145.39
	2330	Subtracted			226.75
40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [swissprot;acc:p12750]	182		0	1317.84	177.38	1495.22
	255	Divided			1.1346
	1974		1	3678.62	1.05993	3470.64
	2364	Subtracted			207.98
40s ribosomal protein s4, y isoform 2. [swissprot;acc:q8td47]	181		0	1318.22	177.44	1495.66
	254	Divided			1.13461
	1967		1	3678.56	1.05994	3470.55
	2363	Subtracted			208.01

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.