Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Network Comparison Type Gene Value Type description Interaction Map green red Filtered network_comparison
Results: HTML CSV LaTeX Showing element 101 to 150 of 16578 in total
Value Type  : Measured
Filtered  : 1
Rank
Network Comparison Type
description
Interaction Map
green
red
network_comparison
26 Divided guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-12 subunit. [swissprot;acc:q9ubi6] High confidence 892.67 1833.01 2.0534
sperm associated antigen 7. [refseq;acc:nm_004890] Low confidence 19280.8 23318 1.20939
Subtracted hepatocellular carcinoma-associated protein hca1. [refseq;acc:nm_020932] High confidence 18263 23693.7 5430.7
septin-like protein kiaa0202 (fragment). [swissprot;acc:q92599] Low confidence 15033.4 13203.5 1829.9
27 Divided guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-4 subunit. [swissprot;acc:p50150] High confidence 895.134 1834.33 2.04922
protein kinase, interferon-inducible double stranded rna dependent activator; protein activator of the interferon-induced protein kinase. [refseq;acc:nm_003690] Low confidence 4614.87 3840.85 1.20152
Subtracted melanoma-associated antigen 6 (mage-6 antigen) (mage3b). [swissprot;acc:p43360] High confidence 18263 23693.7 5430.7
microtubule-associated proteins 1a/1b light chain 3b (map1a/map1b lc3 b) (map1a/1b light chain 3 b). [swissprot;acc:q9gzq8] Low confidence 11654.4 13470.1 1815.7
28 Divided guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-3 subunit. [swissprot;acc:p29798] High confidence 895.194 1834.36 2.04912
tob2 protein (transducer of erbb-2 2). [swissprot;acc:q14106] Low confidence 3719.66 3098.94 1.2003
Subtracted microtubule-associated proteins 1a/1b light chain 3a (map1a/map1b lc3 a) (map1a/1b light chain 3 a). [swissprot;acc:q9h492] 11652.4 13466.8 1814.4
necdin. [swissprot;acc:q99608] High confidence 18263 23693.7 5430.7
29 Divided guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-8 subunit (gamma-9). [swissprot;acc:q9uk08] 895.507 1834.52 2.04858
tob1 protein (transducer of erbb-2 1). [swissprot;acc:p50616] Low confidence 3739.84 3121.28 1.19818
Subtracted melanoma-associated antigen d1 (mage-d1 antigen) (neurotrophin receptor-interacting mage homolog) (pro2292). [swissprot;acc:q9y5v3] High confidence 18263 23693.7 5430.7
septin 10 isoform 1. [refseq;acc:nm_144710] Low confidence 14872.6 13081.2 1791.4
30 Divided bestrophin (vitelliform macular dystrophy protein) (tu15b). [swissprot;acc:o76090] 43509.4 36474.3 1.19288
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-5 subunit. [swissprot;acc:p30670] High confidence 895.633 1834.59 2.04837
Subtracted melanoma-associated antigen f1 (mage-f1 antigen). [swissprot;acc:q9hay2] 18263 23693.7 5430.7
phosphatidylinositol-glycan biosynthesis, class f protein (pig-f). [swissprot;acc:q07326] Low confidence 5058.5 3278 1780.5
31 Divided guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-10 subunit. [swissprot;acc:p50151] High confidence 895.697 1834.63 2.04827
vitelliform macular dystrophy 2-like protein 2. [refseq;acc:nm_153274] Low confidence 43503.3 36469.3 1.19287
Subtracted melanoma antigen, family b, 6. [refseq;acc:nm_173523] High confidence 18263 23693.7 5430.7
n33 protein. [swissprot;acc:q13454] Low confidence 5058.5 3278 1780.5
32 Divided guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-5 like subunit. [swissprot;acc:q9y3k8] High confidence 895.893 1834.73 2.04793
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [refseq;acc:nm_006333] Low confidence 43368.8 36360.3 1.19275
Subtracted implantation-associated protein. [refseq;acc:nm_032121] 5058.5 3278 1780.5
melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [swissprot;acc:p43358] High confidence 18263 23693.7 5430.7
33 Divided guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-11 subunit. [swissprot;acc:p50152] 896.972 1835.3 2.04611
vitelliform macular dystrophy 2-like protein 1. [refseq;acc:nm_017682] Low confidence 43368.8 36360.3 1.19275
Subtracted melanoma-associated antigen 9 (mage-9 antigen). [swissprot;acc:p43362] High confidence 18263 23693.7 5430.7
septin 6. [swissprot;acc:q14141] Low confidence 14773.7 13005.8 1767.9
34 Divided guanine nucleotide-binding protein g(y), alpha subunit (alpha-11). [swissprot;acc:p29992] High confidence 907.546 1836.71 2.02382
protein cgi-126 (protein hspc155). [swissprot;acc:q9y3c8] Low confidence 6352.4 5339.5 1.1897
Subtracted cyclic-amp-dependent transcription factor atf-3 (activating transcription factor 3). [swissprot;acc:p18847] 7251 5492.04 1758.96
melanoma-associated antigen 8 (mage-8 antigen). [swissprot;acc:p43361] High confidence 18263 23693.7 5430.7
35 Divided deoxyribonuclease ii beta isoform 1 precursor; deoxyribonuclease ii beta; endonuclease dlad. [refseq;acc:nm_021233] Low confidence 39358.1 33111.4 1.18866
guanine nucleotide-binding protein g(q), alpha subunit. [swissprot;acc:p50148] High confidence 907.564 1836.71 2.02378
Subtracted melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [swissprot;acc:o60732] 18263 23693.7 5430.7
rhomboid-related protein 4 (ec 3.4.21.-) (ventrhoid transmembrane protein). [swissprot;acc:p58872] Low confidence 21503.3 23239.9 1736.6
36 Divided guanine nucleotide-binding protein g(z), alpha subunit (g(x) alpha chain) (gz-alpha). [swissprot;acc:p19086] High confidence 907.741 1836.76 2.02344
proto-oncogene protein c-fos (cellular oncogene fos) (g0/g1 switch regulatory protein 7). [swissprot;acc:p01100] Low confidence 7593.77 6462.09 1.17513
Subtracted bax inhibitor-1 (bi-1) (testis enhanced gene transcript). [swissprot;acc:p55061] 21503.3 23239.9 1736.6
melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [swissprot;acc:p43365] High confidence 18263 23693.7 5430.7
37 Divided guanine nucleotide-binding protein g(t), alpha-1 subunit (transducin alpha-1 chain). [swissprot;acc:p11488] 907.763 1836.76 2.02339
jun dimerization protein. [refseq;acc:nm_130469] Low confidence 7593.77 6462.09 1.17513
Subtracted melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [swissprot;acc:p43355] High confidence 18263 23693.7 5430.7
rhomboid-related protein 1 (ec 3.4.21.-) (rrp) (rhomboid-like protein 1). [swissprot;acc:o75783] Low confidence 21503.3 23239.9 1736.6
38 Divided guanine nucleotide-binding protein g(t), alpha-2 subunit (transducin alpha-2 chain). [swissprot;acc:p19087] High confidence 907.774 1836.76 2.02337
rab11-family interacting protein 4. [refseq;acc:nm_032932] Low confidence 8696.7 7407.56 1.17403

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/