MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

green	Filtered	description	network_comparison	Gene	Value Type	Interaction Map	red	Rank	Network Comparison Type

Results: HTML CSV LaTeX

Showing element 951 to 1000 of 77072 in total

green  : 0
Filtered  : 1
network_comparison  : 0
red  : 0
Network Comparison Type  : Subtracted

description	Value Type	Interaction Map	Rank
lipin 2. [swissprot;acc:q92539]	Measured	Low confidence	5050
	Ranked
	Squared
	Rooted
lipin 3 (lipin 3-like) (fragments). [swissprot;acc:q9bqk8]	Measured		5037
	Ranked		5036
	Squared		5037
	Rooted
lyl-1 protein (lymphoblastic leukemia derived sequence 1). [swissprot;acc:p12980]	Measured	High confidence	3107
	Ranked
	Squared
	Rooted
lysosomal trafficking regulator (beige homolog). [swissprot;acc:q99698]	Measured		2929
	Ranked
	Squared
	Rooted
mab-21-like protein 1; mab-21-like 1. [refseq;acc:nm_005584]	Measured		2786
	Ranked
	Squared
	Rooted
mab-21-like protein 2; mab-21-like 2. [refseq;acc:nm_006439]	Measured		2783
	Ranked
	Squared
	Rooted
mago nashi protein homolog. [swissprot;acc:p50606]	Measured		2864
	Ranked
	Squared
	Rooted
major centromere autoantigen b (centromere protein b) (cenp-b). [swissprot;acc:p07199]	Measured		3013
		Low confidence	5040
	Ranked	High confidence	3013
		Low confidence	5039
	Squared	High confidence	3013
		Low confidence	5040
	Rooted	High confidence	3013
		Low confidence	5040
malate dehydrogenase, cytoplasmic (ec 1.1.1.37). [swissprot;acc:p40925]	Measured	High confidence	3213
	Ranked
	Squared
	Rooted
mam domain containing glycosylphosphatidylinositol anchor 1; glycosyl-phosphatidyl-inositol-mam. [refseq;acc:nm_153487]	Measured		3070
	Ranked
	Squared
	Rooted
membrane-bound transcription factor site 2 protease (ec 3.4.24.-) (site-2 protease) (sterol-regulatory element-binding proteins intramembrane protease). [swissprot;acc:o43462]	Measured		3215
	Ranked
	Squared
	Rooted
microfibrillar-associated protein 1. [swissprot;acc:p55081]	Measured		2949
	Ranked

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.