Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Value Type Filtered Gene Rank description green Network Comparison Type network_comparison Interaction Map red
Results: HTML CSV LaTeX Showing element 501 to 550 of 38536 in total
Value Type  : Measured
Filtered  : 0
Network Comparison Type  : Divided
Rank
description
green
network_comparison
Interaction Map
red
251 keratin associated protein 4-12; keratin associated protein 4.12. [refseq;acc:nm_031854] 1079.38 1.13498 High confidence 1225.08
zinc finger protein 74 (hznf7). [swissprot;acc:q16587] 1969.49 1.19447 Low confidence 2352.49
252 star-related lipid transfer protein 6 (stard6) (start domain- containing protein 6). [swissprot;acc:p59095] 1079.38 1.13498 High confidence 1225.08
zinc finger protein 285. [refseq;acc:nm_152354] 1969.39 1.19447 Low confidence 2352.38
253 espin. [refseq;acc:nm_031475] 1079.38 1.13498 High confidence 1225.07
zinc finger protein 117 (zinc finger protein hpf9) (fragment). [swissprot;acc:q03924] 1969.43 1.19447 Low confidence 2352.42
254 40s ribosomal protein s4, y isoform 2. [swissprot;acc:q8td47] 1495.66 1.13461 High confidence 1318.22
zinc finger protein 141. [swissprot;acc:q15928] 1969.43 1.19447 Low confidence 2352.42
255 40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [swissprot;acc:p12750] 1495.22 1.1346 High confidence 1317.84
zinc finger protein 197 (znf20). [swissprot;acc:o14709] 1969.57 1.19446 Low confidence 2352.58
256 keratin associated protein 9-4; keratin associated protein 9.4. [refseq;acc:nm_033191] 1079.77 1.13418 High confidence 1224.65
similar to zinc finger protein 85 (zinc finger protein hpf4) (htf1). [refseq;acc:nm_033196] 1969.57 1.19446 Low confidence 2352.58
257 creatine kinase, ubiquitous mitochondrial precursor (ec 2.7.3.2) (u- mtck) (mia-ck) (acidic-type mitochondrial creatine kinase). [swissprot;acc:p12532] 759.896 1.13358 High confidence 861.401
zinc finger protein mgc21738. [refseq;acc:nm_145044] 1969.72 1.19445 Low confidence 2352.73
258 40s ribosomal protein s15 (rig protein). [swissprot;acc:p11174] 1337.54 1.13048 High confidence 1183.16
zinc finger protein 257 (bone marrow zinc finger 4) (bmzf-4). [swissprot;acc:q9y2q1] 1969.86 1.19445 Low confidence 2352.89
259 60s ribosomal protein l23a. [swissprot;acc:p29316] 1463.51 1.1297 High confidence 1295.49
krueppel-related zinc finger protein 1 (hkr1 protein). [swissprot;acc:p10072] 1969.86 1.19445 Low confidence 2352.89
260 voltage-dependent calcium channel gamma-5 subunit (neuronal voltage- gated calcium channel gamma-5 subunit). [swissprot;acc:q9uf02] 2202 1.1296 High confidence 1949.36
zinc finger protein 354c; krab-zinc finger protein synten. [refseq;acc:nm_014594] 1969.68 1.19445 Low confidence 2352.69
261 c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [sptrembl;acc:q9br02] 1463.55 1.12945 High confidence 1295.81
zinc finger protein zfd25. [swissprot;acc:q9uii5] 1969.64 1.19445 Low confidence 2352.64
262 adenylyl cyclase-associated protein 2 (cap 2). [swissprot;acc:p40123] 676.971 1.12926 High confidence 764.479
zinc finger protein 44 (zinc finger protein kox7) (gonadotropin inducible transcription repressor-2) (giot-2). [swissprot;acc:p15621] 1969.64 1.19445 Low confidence 2352.64
263 sirtuin 7; sir2-related protein type 7; sirtuin type 7; sirtuin (silent mating type information regulation 2, s.cerevisiae, homolog) 7; silent mating type information regulation 2, s.cerevisiae, homolog 7; sirtuin silent mating type information regulation 2 homolog 7 (s. cerevisiae). [refseq;acc:nm_016538] 1633 1.1286 High confidence 1843
zinc finger protein 62; likely ortholog of mouse zinc finger protein 62. [refseq;acc:nm_152283] 1969.78 1.19445 Low confidence 2352.8
264 pr-domain zinc finger protein 9. [swissprot;acc:q9nqv7] 1969.68 2352.69
sodium/potassium-transporting atpase alpha-2 chain precursor (ec 3.6.3.9) (sodium pump 2) (na+/k+ atpase 2). [swissprot;acc:p50993] 2957.12 1.12829 High confidence 3336.48
265 60s ribosomal protein l9. [swissprot;acc:p32969] 1894.01 1.12375 1685.44
zinc finger protein 221. [swissprot;acc:q9uk13] 1969.64 1.19445 Low confidence 2352.64
266 aldehyde dehydrogenase 8 (ec 1.2.1.5). [swissprot;acc:p48448] 1312.91 1.1235 High confidence 1475.05
zinc finger protein 73 (zinc finger protein 186) (hznf2). [swissprot;acc:o43830] 1969.96 1.19444 Low confidence 2353
267 uncharacterized bone marrow protein bm033. [refseq;acc:nm_018452] 1312.91 1.1235 High confidence 1475.05
zinc finger protein 354a (transcription factor 17) (zinc finger protein eznf). [swissprot;acc:o60765] 1969.92 1.19444 Low confidence 2352.95
268 far upstream element-binding protein; far upstream element binding protein; fuse-binding protein. [refseq;acc:nm_003902] 538.094 1.12346 High confidence 604.529
zinc finger protein 155. [swissprot;acc:q12901] 1969.92 1.19444 Low confidence 2352.95
269 60s ribosomal protein l10 (qm protein) (tumor suppressor qm) (laminin receptor homolog). [swissprot;acc:p27635] 1367.83 1.12309 High confidence 1217.92
zinc finger protein 2. [refseq;acc:nm_021088] 1970.07 1.19443 Low confidence 2353.11
270 ribosomal protein l10-like protein. [refseq;acc:nm_080746] 1367.88 1.12309 High confidence 1217.96
zinc finger protein 19 (zinc finger protein kox12) (fragment). [swissprot;acc:p17023] 1970.01 1.19443 Low confidence 2353.04
271 histone h4. [swissprot;acc:p02304] 24446.3 1.12278 High confidence 21773.1
zinc finger protein zfp-36 (fragment). [swissprot;acc:p16415] 1970.21 1.19443 Low confidence 2353.27
272 60s ribosomal protein l15. [swissprot;acc:p39030] 753.793 1.12261 High confidence 846.216
zinc finger protein 134. [swissprot;acc:p52741] 1970.32 1.19442 Low confidence 2353.38
273 sorcin (22 kda protein) (cp-22) (v19). [swissprot;acc:p30626] 1582.65 1.1218 High confidence 1410.81
zinc finger protein 337. [swissprot;acc:q9y3m9] 1970.36 1.19441 Low confidence 2353.42
274 brain protein 16. [refseq;acc:nm_016458] 2418.14 1.12172 High confidence 2155.75
zinc finger protein 358. [swissprot;acc:q9nw07] 1970.55 1.1944 Low confidence 2353.63
275 novel c2h2 type zinc finger protein. [refseq;acc:nm_024325] 1970.65 2353.74
swi/snf-related matrix-associated actin-dependent regulator of chromatin c2 isoform a; mammalian chromatin remodeling complex brg1-associated factor 170; chromatin remodeling complex baf170 subunit; swi3-like protein; swi/snf complex 170 kda subunit. [refseq;acc:nm_003075] 804.725 1.12172 High confidence 717.401

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/