MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

green	description	red	Filtered	Value Type	Interaction Map	network_comparison	Network Comparison Type	Gene	Rank

Results: HTML CSV LaTeX

Showing element 101 to 150 of 2116 in total

green  : 0
red  : 0
Interaction Map  : High confidence
network_comparison  : 0
Network Comparison Type  : Subtracted

description	Filtered	Value Type	Rank
au rna-binding protein/enoyl-coenzyme a hydratase precursor; au rna-binding protein/enoyl-coenzyme a hydratase; 3-methylglutaconyl-coa hydratase; mga type i. [refseq;acc:nm_001698]	1	Measured	2913
		Ranked
		Squared
		Rooted
ba203i16.1 (hypothetical protein kiaa0970). [sptrembl;acc:q9h1w1]		Measured	3117
		Ranked
		Squared
		Rooted
ba528a10.3.2 (novel protein similar to kiaa0161, isoform 2) (fragment). [sptrembl;acc:q9bx39]		Measured	2968
		Ranked
		Squared
		Rooted
barrier-to-autointegration factor (breakpoint cluster region protein 1). [swissprot;acc:o75531]		Measured	2804
		Ranked
		Squared
		Rooted
bax inhibitor-1 (bi-1) (testis enhanced gene transcript). [swissprot;acc:p55061]		Measured	2950
		Ranked
		Squared
		Rooted
bcl-6 interacting corepressor isoform 1. [refseq;acc:nm_017745]		Measured	2776
		Ranked
		Squared
		Rooted
beta-ureidopropionase (ec 3.5.1.6) (beta-alanine synthase) (n-carbamoyl-beta-alanine amidohydrolase) (bup-1). [swissprot;acc:q9ubr1]		Measured	3145
		Ranked
		Squared
		Rooted
bone morphogenetic protein 5 precursor (bmp-5). [swissprot;acc:p22003]		Measured	3069
		Ranked
		Squared
		Rooted
bone morphogenetic protein 6 precursor (bmp-6). [swissprot;acc:p22004]		Measured	2896
		Ranked
		Squared
		Rooted
bone morphogenetic protein 7 precursor (bmp-7) (osteogenic protein 1) (op-1). [swissprot;acc:p18075]		Measured	3128
		Ranked
		Squared
		Rooted
bone morphogenetic protein 8 precursor (bmp-8) (osteogenic protein 2) (op-2). [swissprot;acc:p34820]		Measured	2773
		Ranked
		Squared
		Rooted
brca1 associated protein. [refseq;acc:nm_006768]	0	Measured	502
		Ranked
		Squared
		Rooted
	1	Measured	3161
		Ranked

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.