Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.
Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 762 to 811 of 12912 in total
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
191\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AQP5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aquaporin 5. [source:swissprot;acc:p55064]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71388.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
96035.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34525\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PLDN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pallidin; pallid (mouse) homolog, pallidin. [source:refseq;acc:nm\_012388]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.1192\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
72.584\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14995\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF3B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 1 (spliceosome associated protein 155) (sap 155) (sf3b155) (pre-mrna splicing factor sf3b 155 kda subunit). [source:swissprot;acc:o75533]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4638.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5923.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27712\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
192\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AQP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aquaporin-cd (aqp-cd) (water channel protein for renal collecting duct) (adh water channel) (aquaporin 2) (collecting duct water channel protein) (wch-cd). [source:swissprot;acc:p41181]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71387.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
96033.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34524\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARAF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
a-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (a-raf-1) (proto-oncogene pks). [source:swissprot;acc:p10398]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17757.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
14008\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26767\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MSI2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
musashi 2 isoform a. [source:refseq;acc:nm\_138962]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.491\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
199.458\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14055\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 4 isoform b; rna-binding protein. [source:refseq;acc:nm\_021164]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
53.6107\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
61.5862\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14877\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
193\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
MIP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lens fiber major intrinsic protein (mip26) (mp26) (aquaporin 0). [source:swissprot;acc:p30301]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71386.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
96032.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34524\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MSI1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
musashi 1. [source:refseq;acc:nm\_002442]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.491\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
199.458\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14055\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NOSTRIN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nostrin. [source:refseq;acc:nm\_052946]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RAF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (raf-1) (c-raf). [source:swissprot;acc:p04049]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17756.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
14007.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26766\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
194\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AQP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aquaporin-chip (water channel protein for red blood cells and kidney proximal tubule) (aquaporin 1) (aqp-1) (urine water channel). [source:swissprot;acc:p29972]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71346.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95965.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34505\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CCNG2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin g2. [source:swissprot;acc:q16589]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17738.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13995.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26743\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNF8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eap30 subunit of ell complex. [source:refseq;acc:nm\_007241]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ZC3H14\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear protein ukp68. [source:refseq;acc:nm\_024824]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.491\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
199.458\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14055\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
195\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CCNG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin g1 (cyclin g). [source:swissprot;acc:p51959]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13995.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26743\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRPF40B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
huntingtin interacting protein c. [source:refseq;acc:nm\_012272]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.971\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
200.417\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13748\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC39A6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
liv-1 protein, estrogen regulated. [source:refseq;acc:nm\_012319]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SSR4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
translocon-associated protein, delta subunit precursor (trap-delta) (signal sequence receptor delta subunit) (ssr-delta). [source:swissprot;acc:p51571]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
71062.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
95488.9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}}\\\cline{1-3}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
196\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-1 precursor. [source:swissprot;acc:o94985]\vspace{3pt}}&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXP4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
forkhead box p4; fork head-related protein like a; winged-helix repressor foxp4. [source:refseq;acc:nm\_138457]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
263.215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
231.407\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13745\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GAD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamate decarboxylase, 65 kda isoform (ec 4.1.1.15) (gad-65) (65 kda glutamic acid decarboxylase). [source:swissprot;acc:q05329]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP2R5E\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, epsilon isoform (pp2a, b subunit, b' epsilon isoform) (pp2a, b subunit, b56 epsilon isoform) (pp2a, b subunit, pr61 epsilon isoform) (pp2a, b subunit, r5 epsilon isoform). [source:swissprot;acc:q16537]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13995.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26742\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
197\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71062.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95488.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
forkhead box protein p1 (hspc215). [source:swissprot;acc:q9h334]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
263.215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
231.407\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13745\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NAPG\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-soluble nsf attachment protein (snap-gamma) (n-ethylmaleimide- sensitive factor attachment protein, gamma). [source:swissprot;acc:q99747]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP2R5A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, alpha isoform (pp2a, b subunit, b' alpha isoform) (pp2a, b subunit, b56 alpha isoform) (pp2a, b subunit, pr61 alpha isoform) (pp2a, b subunit, r5 alpha isoform). [source:swissprot;acc:q15172]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13995.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26742\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
198\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
BRAF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
b-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (p94) (v-raf murine sarcoma viral oncogene homolog b1). [source:swissprot;acc:p15056]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
17710.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13977.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26708\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXP3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
forkhead box protein p3 (zinc finger protein jm2) (scurfin). [source:swissprot;acc:q9bzs1]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
263.191\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
231.394\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13741\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GAD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamate decarboxylase, 67 kda isoform (ec 4.1.1.15) (gad-67) (67 kda glutamic acid decarboxylase). [source:swissprot;acc:q99259]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PTPRB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein-tyrosine phosphatase beta precursor (ec 3.1.3.48) (r-ptp- beta). [source:swissprot;acc:p23467]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
199\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
EGFL8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
palmitoyl-protein thioesterase 2 precursor (ec 3.1.2.22) (palmitoyl- protein hydrolase 2) (ppt-2) (g14). [source:swissprot;acc:q9umr5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.735\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
276.059\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13729\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP2CA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, catalytic subunit, alpha isoform (ec 3.1.3.16) (pp2a-alpha) (replication protein c) (rp-c). [source:swissprot;acc:p05323]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4916.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3888.18\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26455\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRSS16\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
thymus-specific serine protease precursor (ec 3.4.-.-). [source:swissprot;acc:q9nqe7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
STT3B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
source of immunodominant mhc-associated peptides; homolog of yeast stt3 gene. [source:refseq;acc:nm\_178862]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
200\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCAR1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
crk-associated substrate (p130cas) (breast cancer anti-estrogen resistance 1 protein). [source:swissprot;acc:p56945]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4808.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6074.21\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26315\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CCDC47\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gk001 protein. [source:refseq;acc:nm\_020198]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
EGFL7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
egf-like-domain, multiple 7; neu1 protein. [source:refseq;acc:nm\_016215]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.718\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
276.018\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1372\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
STT3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
201\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CCT4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
t-complex protein 1, delta subunit (tcp-1-delta) (cct-delta) (stimulator of tar rna binding). [source:swissprot;acc:p50991]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4810.22\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6075.04\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26294\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-2 precursor. [source:swissprot;acc:q9h4d0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71033.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95440.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3436\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
DDOST\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [source:swissprot;acc:p39656]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 4 isoform b; rna-binding protein. [source:refseq;acc:nm\_021164]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
240.133\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
211.382\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13601\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
202\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
57.3527\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65.7973\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14724\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-3 precursor. [source:swissprot;acc:q9bqt9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71030.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95434.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34358\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NEDD9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
enhancer of filamentation 1 (hef1) (crk-associated substrate-related protein) (cas-l) (casl) (pp105) (neural precursor cell expressed developmentally down-regulated 9). [source:swissprot;acc:q14511]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4812.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6076.09\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26269\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TRPC4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
short transient receptor potential channel 4 (trpc4) (trp-related protein 4) (htrp-4) (htrp4). [source:swissprot;acc:q9ubn4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.478\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
228.784\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13553\vspace{3pt}}\\\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
203\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
hpaii tiny  fragments locus 9c. [source:refseq;acc:nm\_022727]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20988.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
15632.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34263\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46.3291\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
53.1063\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14628\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATG12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
autophagy protein 12-like (apg12-like). [source:swissprot;acc:o94817]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11757.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9352.11\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25723\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/