Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 7564 to 7613 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1891\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna replication licensing factor mcm3 (dna polymerase alpha holoenzyme-associated protein p1) (rlf beta subunit) (p102 protein) (p1-mcm3). [source:swissprot;acc:p25205]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.828\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
231.395\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01051\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1892\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bromodomain-containing protein 2 (ring3 protein) (o27.1.1). [source:swissprot;acc:p25440]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5438.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5783.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06334\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
kelch-like ech-associated protein 1 (cytosolic inhibitor of nrf2). [source:swissprot;acc:q14145]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.828\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
231.395\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01051\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-cytochrome b5 reductase (ec 1.6.2.2) (b5r). [source:swissprot;acc:p00387]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
65.3912\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.3008\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0292\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinoic acid induced 17; pias-like protein hzimp10. [source:refseq;acc:nm\_020338]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24776.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27116.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09445\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1893\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
acid ceramidase precursor (ec 3.5.1.23) (acylsphingosine deacylase) (n-acylsphingosine amidohydrolase) (ac) (putative 32 kda heart protein) (php32). [source:swissprot;acc:q13510]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6830.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7261.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06319\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
gdp-mannose pyrophosphorylase b isoform 1; mannose-1-phosphate guanylyltransferase; amphoterin induced gene 3. [source:refseq;acc:nm\_013334]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.842\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01045\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l17; lyst-interacting protein lip2. [source:refseq;acc:nm\_022061]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12646.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13840\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09437\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rna-binding protein with multiple splicing (rbp-ms). [source:swissprot;acc:q93062]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.9751\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.7825\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02916\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1894\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphofructokinase, muscle type (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme a) (pfk-a) (phosphofructokinase-m). [source:swissprot;acc:p08237]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
52.8726\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
54.4127\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02913\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l17 (l23). [source:swissprot;acc:p18621]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3598.08\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3384.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06308\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
gdp-mannose pyrophosphorylase a; mannose-1-phosphate guanylyltransferase (gdp). [source:refseq;acc:nm\_013335]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.842\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01045\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein transport protein sec61 gamma subunit. [source:swissprot;acc:p38384]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
12567.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13752.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09427\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1895\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l10 (qm protein) (tumor suppressor qm) (laminin receptor homolog). [source:swissprot;acc:p27635]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
12581.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13765.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09413\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
adenylyl cyclase-associated protein 2 (cap 2). [source:swissprot;acc:p40123]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.853\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.639\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01036\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycerol-3-phosphate dehydrogenase, mitochondrial precursor (ec 1.1.99.5) (gpd-m) (gpdh-m). [source:swissprot;acc:p43304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
65.1861\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.0846\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02912\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ruvb-like 1 (ec 3.6.1.-) (49-kda tata box-binding protein-interacting protein) (49 kda tbp-interacting protein) (tip49a) (pontin 52) (nuclear matrix protein 238) (nmp 238) (54 kda erythrocyte cytosolic protein) (ecp-54) (tip60-associated protein 54-alpha) (tap54-alpha). [source:swissprot;acc:q9y265]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5882.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6252.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.063\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1896\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
importin alpha-6 subunit (karyopherin alpha-5 subunit). [source:swissprot;acc:o15131]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4427\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2881\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02909\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lim domain binding 2; lim binding domain 2; lim domain-binding factor-2. [source:refseq;acc:nm\_001290]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.883\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
197.835\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01035\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
m-phase inducer phosphatase 1 (ec 3.1.3.48) (dual specificity phosphatase cdc25a). [source:swissprot;acc:p30304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4521\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4805.16\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06285\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein l10-like protein. [source:refseq;acc:nm\_080746]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12581.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13765.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09413\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1897\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
lim domain binding 1; carboxy terminal lim domain protein 2; lim domain-binding factor-1. [source:refseq;acc:nm\_003893]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.883\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
197.835\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01035\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thioredoxin-like; pkc-interacting cousin of thioredoxin. [source:refseq;acc:nm\_006541]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4590.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4879.11\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06282\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor p65 (nuclear factor nf-kappa-b p65 subunit). [source:swissprot;acc:q04206]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
46338.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42353.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
yip1 interacting factor homolog; yip1p-interacting factor; putative rab5-interacting protein; putative transmembrane protein 54tmp. [source:refseq;acc:nm\_020470]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4353\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2789\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02906\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1898\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6885.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7317.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0628\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lim/homeobox protein lhx4. [source:swissprot;acc:q969g2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.881\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
197.833\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01035\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor relb (i-rel). [source:swissprot;acc:q01201]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
46338.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42353.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
voltage-gated potassium channel beta-3 subunit (k+ channel beta-3 subunit) (kv-beta-3). [source:swissprot;acc:o43448]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2789\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02906\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1899\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
lim/homeobox protein lhx3. [source:swissprot;acc:q9ubr4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.884\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
197.837\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01035\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nf-kappab inhibitor alpha (major histocompatibility complex enhancer- binding protein mad3) (i-kappa-b-alpha) (ikappabalpha) (ikb-alpha). [source:swissprot;acc:p25963]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
46338.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42353.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ruvb-like 2 (ec 3.6.1.-) (48-kda tata box-binding protein-interacting protein) (48-kda tbp-interacting protein) (tip49b) (repressing pontin 52) (reptin 52) (51 kda erythrocyte cytosolic protein) (ecp-51) (tip60-associated protein 54-beta) (tap54-beta) (cgi-46). [source:swissprot;acc:q9y230]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5786.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6149.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06269\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
voltage-gated potassium channel beta-1 subunit (k+ channel beta-1 subunit) (kv-beta-1). [source:swissprot;acc:q14722]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4353\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2789\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02906\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1900\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
coproporphyrinogen iii oxidase, mitochondrial precursor (ec 1.3.3.3) (coproporphyrinogenase) (coprogen oxidase) (cox). [source:swissprot;acc:p36551]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
46338.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42353.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
seven in absentia homolog 2. [source:refseq;acc:nm\_005067]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5399.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5737.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06266\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to putative transmembrane protein; homolog of yeast golgi membrane protein yif1p (yip1p-interacting factor). [source:refseq;acc:nm\_033557]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4353\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2789\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02906\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 27 (fatty acid transporter), member 4; fatty acid transport protein 4. [source:refseq;acc:nm\_005094]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.401\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01034\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1901\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aflatoxin b1 aldehyde reductase 2 (ec 1.-.-.-) (afb1-ar 2). [source:swissprot;acc:o95154]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4353\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2789\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02906\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
delta(14)-sterol reductase (ec 1.3.1.70) (c-14 sterol reductase) (sterol c14-reductase) (delta14-sr) (transmembrane 7 superfamily member 2) (another new gene 1) (putative sterol reductase sr-1). [source:swissprot;acc:o76062]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.411\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01034\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
inorganic pyrophosphatase (ec 3.6.1.1) (pyrophosphate phospho- hydrolase) (ppase). [source:swissprot;acc:q15181]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5204.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5530.11\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06261\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
kinesin-like protein kif2 (kinesin-2) (hk2). [source:swissprot;acc:o00139]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23935.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26185.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.094\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1902\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
alpha/beta hydrolase domain containing protein 3; lung alpha/beta hydrolase 3. [source:refseq;acc:nm\_138340]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4353\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2789\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02906\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
inorganic pyrophosphatase 2 isoform 1. [source:refseq;acc:nm\_176869]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5204.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5530.11\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06261\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lamin b receptor (integral nuclear envelope inner membrane protein) (lmn2r). [source:swissprot;acc:q14739]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.411\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01034\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of cytokine signaling 1 (socs-1) (jak-binding protein) (jab) (stat induced stat inhibitor 1) (ssi-1) (tec-interacting protein 3) (tip-3). [source:swissprot;acc:o15524]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27114.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
29663.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09399\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1903\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aryl-hydrocarbon interacting protein-like 1. [source:swissprot;acc:q9nzn9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5204.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5530.11\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06261\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glia maturation factor gamma (gmf-gamma). [source:swissprot;acc:o60234]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27114.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
29663.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09399\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
golgi membrane protein sb140; smooth muscle cell associated protein 5. [source:refseq;acc:nm\_030799]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.4353\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.2789\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02906\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 27 member 3; fatty acid transport protein 3. [source:refseq;acc:nm\_024330]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.406\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.385\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01034\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1904\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ah receptor-interacting protein (aip) (immunophilin homolog ara9) (hbv-x associated protein 2). [source:swissprot;acc:o00170]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5204.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5530.11\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06261\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/