MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Filtered	Gene	description	green	Rank	red	Value Type	network_comparison	Interaction Map	Network Comparison Type

Results: HTML CSV LaTeX

Showing element 1 to 50 of 77072 in total

Filtered  : 0

description	green	Rank	red	Value Type	network_comparison	Interaction Map	Network Comparison Type
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [swissprot;acc:q04446]	17.0804	537	16.298	Rooted	1.04801	Low confidence	Divided
		634			0.7824		Subtracted
	18.0183	53	11.844		1.5213	High confidence	Divided
		69			6.1743		Subtracted
	851.77	131	645.504	Measured	1.31954	Low confidence	Divided
		273			206.266		Subtracted
	934.348	37	334.401		2.79409	High confidence	Divided
		45			599.947		Subtracted
	1034.13	37	101.05	Squared	10.2338		Divided
		131			933.08		Subtracted
	1268.51	146	775.72		1.63527	Low confidence	Divided
		319			492.79		Subtracted
	13590.3	600	13205.3	Ranked	385
		629			1.02915		Divided
	13895.8	172	15260.6		1364.8	High confidence	Subtracted
		242			1.09822		Divided
17-beta-hydroxysteroid dehydrogenase type vii-like. [refseq;acc:nm_182829]	39.5126	726	39.0982	Rooted	0.4144	Low confidence	Subtracted
		768			1.0106		Divided
	4869.42	627	4825.89	Measured	43.53		Subtracted
		778			1.00902		Divided
	10050.9	627	10347.7	Ranked	1.02953
		641			296.8		Subtracted
	40451	536	40270.8	Squared	180.2
		815			1.00447		Divided
25-hydroxyvitamin d-1 alpha hydroxylase, mitochondrial precursor (ec 1.14.-.-) (25-ohd-1 alpha-hydroxylase) (25-hydroxyvitamin d3 1- alpha-hydroxylase) (vd3 1a hydroxylase) (p450c1 alpha) (p450vd1- alpha). [swissprot;acc:o15528]	0.344399	26	44.3683		128.828	High confidence
		336			44.0239		Subtracted
	3.80565	26	13.7805	Rooted	3.62106		Divided
		28			9.97485		Subtracted
	9.42485	131	11.365		1.20585	Low confidence	Divided
		376			1.94015		Subtracted
	26.1599	19	305.45	Measured	11.6763	High confidence	Divided
		115			279.29		Subtracted
	181.734	171	222.779		1.22585	Low confidence	Divided
		635			41.045		Subtracted
	296.481	697	307.765	Squared	1.03806		Divided
		749			11.284		Subtracted
	14695.2	220	13533.1	Ranked	1162.1
		384			1.08587		Divided
	18499.2	28	12941.7		5557.5	High confidence	Subtracted
		47			1.42943		Divided
26s proteasome non-atpase regulatory subunit 10 (26s proteasome regulatory subunit p28) (gankyrin). [swissprot;acc:o75832]	23.2445	793	23.11	Rooted	1.00582	Low confidence
		797			0.1345		Subtracted
	32.0298	335	30.7424		1.2874	High confidence
		370			1.04188		Divided
	1609.88	762	1593.68	Measured	16.2	Low confidence	Subtracted
		771			1.01017		Divided
	2642.79	380	2683.61		40.82	High confidence	Subtracted
		451			1.01545		Divided
	6490.54	584	6603.33	Squared	112.79	Low confidence	Subtracted
		763			1.01738		Divided

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.