Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3132 to 3181 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
783\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar atp synthase subunit b, brain isoform (ec 3.6.3.14) (v-atpase b2 subunit) (vacuolar proton pump b isoform 2) (endomembrane proton pump 58 kda subunit) (ho57). [source:swissprot;acc:p21281]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5874.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6533.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1121\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
784\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dc11 protein. [source:refseq;acc:nm\_020186]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna repair protein rad52 homolog. [source:swissprot;acc:p43351]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.2361\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58.3858\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06595\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polyglutamine binding protein 1; nuclear protein containing ww domain 38 kd. [source:refseq;acc:nm\_005710]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.385\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.131\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04789\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar atp synthase subunit e (ec 3.6.3.14) (v-atpase e subunit) (vacuolar proton pump e subunit) (v-atpase 31 kda subunit) (p31). [source:swissprot;acc:p36543]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5874.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6533.36\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1121\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
785\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
amyloid beta precursor protein-binding protein 1; amyloid protein-binding protein 1. [source:refseq;acc:nm\_003905]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.2332\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58.3925\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06577\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hemk protein homolog (ec 2.1.1.-) (m.hsahemkp). [source:swissprot;acc:q9y5r4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4997\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5557.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1121\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuroepithelial cell transforming gene 1; guanine nucleotide regulatory protein (oncogene); rho guanine nucleotide exchange factor (gef) 8. [source:refseq;acc:nm\_005863]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.447\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.508\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04685\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
786\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s9. [source:swissprot;acc:p46781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
52.0101\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.813\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0655\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
5-aminolevulinic acid synthase, erythroid-specific, mitochondrial precursor (ec 2.3.1.37) (delta-aminolevulinate synthase) (delta-ala synthetase) (alas-e). [source:swissprot;acc:p22557]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pyruvate carboxylase, mitochondrial precursor (ec 6.4.1.1) (pyruvic carboxylase) (pcb). [source:swissprot;acc:p11498]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9304.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10347.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11204\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rho guanine nucleotide exchange factor 3; rhogef protein; 59.8 kda protein; exchange factor found in platelets and leukemic and neuronal tissues, xpln. [source:refseq;acc:nm\_019555]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
244.447\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
233.508\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.04685\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
787\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
down-regulated in metastasis. [source:refseq;acc:nm\_014503]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uba/ubx 33.3 kda protein. [source:swissprot;acc:q04323]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.7769\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0655\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1c (uba3 homolog, yeast); ubiquitin-activating enzyme e1c (homologous to yeast uba3). [source:refseq;acc:nm\_003968]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar proton translocating atpase 116 kda subunit a isoform 2 (v-atpase 116-kda isoform a2) (tj6). [source:swissprot;acc:q9y487]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5890.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6547.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11161\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
788\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ero1-like. [source:refseq;acc:nm\_014584]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.7769\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0655\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hira-interacting protein 5 (cgi-33). [source:swissprot;acc:q9ums0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
138.705\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
132.538\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04653\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1 (a1s9 protein). [source:swissprot;acc:p22314]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar proton translocating atpase 116 kda subunit a isoform 3 (v- atpase 116-kda isoform a3) (osteoclastic proton pump 116 kda subunit) (oc-116 kda) (oc116) (t-cell immune regulator 1) (t cell immune response cdna7 protein) (tirc7). [source:swissprot;acc:q13488]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5890.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6547.81\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11161\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
789\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein sa (p40) (34/67 kda laminin receptor) (colon carcinoma laminin-binding protein) (nem/1chd4) (multidrug resistance- associated protein mgr1-ag). [source:swissprot;acc:p08865]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
atpase, h+ transporting, lysosomal v0 subunit a isoform 4; vacuolar proton pump 116 kda accessory subunit; vacuolar proton pump, subunit 2; h(+)-transporting two-sector atpase, noncatalytic accessory protein 1b; atpase, h+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1b; renal tubular acidosis; atpase, h+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 2 (38kd). [source:refseq;acc:nm\_020632]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5890.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6547.99\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1116\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-binding mitochondrial carrier protein aralar1 (solute carrier family 25, member 12). [source:swissprot;acc:o75746]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
midasin (midas-containing protein). [source:swissprot;acc:q9nu22]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.2779\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
57.8311\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06546\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
790\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s21. [source:swissprot;acc:p35265]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma antigen recognized by t cells 2. [source:refseq;acc:nm\_018194]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
parafibromin. [source:refseq;acc:nm\_024529]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53.2852\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.7723\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06544\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar proton translocating atpase 116 kda subunit a isoform 1 (clathrin-coated vesicle/synaptic vesicle proton pump 116 kda subunit) (vacuolar proton pump subunit 1) (vacuolar adenosine triphosphatase subunit ac116). [source:swissprot;acc:q93050]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5890.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6548.28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1116\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
791\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5-aminolevulinic acid synthase, nonspecific, mitochondrial precursor (ec 2.3.1.37) (delta-aminolevulinate synthase) (delta-ala synthetase) (alas-h). [source:swissprot;acc:p13196]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cdc42-interacting protein 4 (thyroid receptor interacting protein 10) (trip-10). [source:swissprot;acc:q15642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.5007\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58.6648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06539\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic antiproteinase 3 (cap3) (cap-3) (protease inhibitor 9) (serpin b9). [source:swissprot;acc:p50453]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transducin beta-like 3; wd-repeat protein sazd. [source:refseq;acc:nm\_006453]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
4025.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4474.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11154\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
792\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
axonemal dynein light intermediate polypeptide 1 (inner dynein arm light chain, axonemal) (hp28). [source:swissprot;acc:o14645]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6772.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7526.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11125\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-binding mitochondrial carrier protein aralar2 (solute carrier family 25, member 13) (citrin). [source:swissprot;acc:q9ujs0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
maspin precursor (protease inhibitor 5). [source:swissprot;acc:p36952]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
proteasome subunit alpha type 5 (ec 3.4.25.1) (proteasome zeta chain) (macropain zeta chain) (multicatalytic endopeptidase complex zeta chain). [source:swissprot;acc:p28066]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.8039\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9633\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06519\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
793\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
acyl carrier protein, mitochondrial precursor (acp) (nadh-ubiquinone oxidoreductase 9.6 kda subunit) (ci-sdap). [source:swissprot;acc:o14561]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27407.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31927.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16492\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
beta-catenin (pro2286). [source:swissprot;acc:p35222]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.2378\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.1631\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06516\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
bomapin (protease inhibitor 10) (serpin b10). [source:swissprot;acc:p48595]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative n6-dna-methyltransferase (ec 2.1.1.-) (protein pred28) (m.hsahemk2p). [source:swissprot;acc:q9y5n5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5036.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5596.36\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11107\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
794\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dihydropyrimidine dehydrogenase [nadp+] precursor (ec 1.3.1.2) (dpd) (dhpdhase) (dihydrouracil dehydrogenase) (dihydrothymine dehydrogenase). [source:swissprot;acc:q12882]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
57.9449\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.719\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06513\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna damage binding protein 1 (damage-specific dna binding protein 1) (ddb p127 subunit) (ddba) (uv-damaged dna-binding protein 1) (uv-ddb 1) (xeroderma pigmentosum group e complementing protein) (xpce) (x- associated protein 1) (xap-1). [source:swissprot;acc:q16531]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29554.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
34419.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1646\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna topoisomerase ii, alpha isozyme (ec 5.99.1.3). [source:swissprot;acc:p11388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6441.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7154.55\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11075\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
plasminogen activator inhibitor-2 precursor (pai-2) (placental plasminogen activator inhibitor) (monocyte arg-serpin) (urokinase inhibitor). [source:swissprot;acc:p05120]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
795\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna topoisomerase ii, beta isozyme (ec 5.99.1.3). [source:swissprot;acc:q02880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6441.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7154.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11069\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (rna) iii (dna directed) (62kd). [source:refseq;acc:nm\_006468]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
52.1577\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.9787\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06491\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
propionyl-coa carboxylase beta chain, mitochondrial precursor (ec 6.4.1.3) (pccase beta subunit) (propanoyl-coa:carbon dioxide ligase beta subunit). [source:swissprot;acc:p05166]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29554.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
34419.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1646\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serpin b11. [source:swissprot;acc:q96p15]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
796\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6834.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7590.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11061\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/