Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Hugo Network Comparison Type description Value Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2451 to 2500 of 33156 in total 
Network Comparison Type: Divided
Filtered: 1

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\def\wcB{0.11111111111111\textwidth}
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\def\wcD{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{6}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
307\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
GRAP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
grb2-related adaptor protein 2 (gads protein) (growth factor receptor binding protein) (grblg) (grf40 adaptor protein) (grf-40) (grb-2-like protein) (grb2l) (grbx) (p38) (hematopoietic cell-associated adaptor protein grpl) (adapter protein grid) (sh3-sh2-sh3 adaptor mona). [source:swissprot;acc:o75791]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28896.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
36766.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27237\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
probable serine protease htra3 precursor (ec 3.4.21.-). [source:swissprot;acc:p83110]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7943.99\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8405.13\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05805\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
LAPTM4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lysosomal-associated transmembrane protein 4a (golgi 4-transmembrane spanning transporter mtp). [source:swissprot;acc:q15012]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
70.0696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.7968\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05319\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PHKG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
phosphorylase b kinase gamma catalytic chain, skeletal muscle isoform (ec 2.7.1.38) (phosphorylase kinase gamma subunit 1). [source:swissprot;acc:q16816]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
217.957\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
227.209\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.04245\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SIN3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcriptional co-repressor sin3a; transcriptional regulator, sin3a (yeast). [source:refseq;acc:nm\_015477]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
50.4687\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
45.2733\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11476\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SRR\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine racemase (ec 5.1.1.-). [source:swissprot;acc:q9gzt4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
308\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AGPAT3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (ec 2.3.1.51) (1- agp acyltransferase 3) (1-agpat 3) (lysophosphatidic acid acyltransferase-gamma) (lpaat-gamma) (1-acylglycerol-3-phosphate o- acyltransferase 3). [source:swissprot;acc:q9nrz7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
30596.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
38919.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27205\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DENR\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
density-regulated protein (drp) (drp1 protein) (smooth muscle cell associated protein-3) (smap-3). [source:swissprot;acc:o43583]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
50.4687\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
45.2733\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11476\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DVL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-1 (dishevelled-1) (dsh homolog 1). [source:swissprot;acc:o14640]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
4977.09\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5966.44\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.19878\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GRPEL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
grpe protein homolog 2, mitochondrial precursor (mt-grpe#2). [source:swissprot;acc:q8taa5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
51507\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
47575.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.08264\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOMER2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homer, neuronal immediate early gene, 2; homer homolog 3 (drosophila). [source:refseq;acc:nm\_004839]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
210.018\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
201.475\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0424\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
probable serine protease htra4 precursor (ec 3.4.21.-). [source:swissprot;acc:p83105]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
7944.21\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8405.32\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05804\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPL34\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l34. [source:swissprot;acc:p49207]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d3 (snrnp core protein d3) (sm-d3). [source:swissprot;acc:p43331]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.2747\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
75.0643\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05317\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
309\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
microsomal signal peptidase 18 kda subunit (ec 3.4.-.-) (spase 18 kda subunit) (spc18) (endopeptidase sp18). [source:swissprot;acc:p21378]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
200.213\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
192.103\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.04222\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm2 (small nuclear ribonuclear protein d homolog) (g7b) (snrnp core sm-like protein sm-x5). [source:swissprot;acc:q9y333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56.185\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
62.6036\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11424\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATP2B2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
plasma membrane calcium-transporting atpase 2 (ec 3.6.3.8) (pmca2) (plasma membrane calcium pump isoform 2) (plasma membrane calcium atpase isoform 2). [source:swissprot;acc:q01814]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
49436.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
45669.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0825\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CUTL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ccaat displacement protein (cdp) (cut-like 1). [source:swissprot;acc:p39880]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
28900.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
36762.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27203\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DVL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-2 (dishevelled-2) (dsh homolog 2). [source:swissprot;acc:o14641]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
4977.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5966.14\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.19855\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RAB26\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ras-related protein rab-26. [source:swissprot;acc:q9ulw5]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10765.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10174.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05803\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEC61A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SOAT2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sterol o-acyltransferase 2 (ec 2.3.1.26) (cholesterol acyltransferase 2) (acyl coenzyme a:cholesterol acyltransferase 2) (acat-2). [source:swissprot;acc:o75908]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
69.5565\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.2539\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05316\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
310\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle alpha isoform (myhc-alpha). [source:swissprot;acc:p13533]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CUTL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein cux-2 (cut-like 2) (fragment). [source:swissprot;acc:o14529]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
28901.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
36762.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27198\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine protease htra1 precursor (ec 3.4.21.-) (l56). [source:swissprot;acc:q92743]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
72.0177\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
75.8419\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0531\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine protease htra2, mitochondrial precursor (ec 3.4.21.-) (high temperature requirement protein a2) (htra2) (omi stress-regulated endoprotease) (serine proteinase omi). [source:swissprot;acc:o43464]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
7945.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8406.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05802\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NDUFA9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 39 kda subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-39kd) (ci-39kd). [source:swissprot;acc:q16795]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
205.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
197.484\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.04186\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SART1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
squamous cell carcinoma antigen recognized by t cells 1; u4/u6.u5 tri-snrnp-associated 110 kda protein; ige autoantigen; sart1(259) protein; sart1(800) protein. [source:refseq;acc:nm\_005146]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
4909.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5878.79\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.19736\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEC61A1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein transport protein sec61 alpha subunit isoform 1 (sec61 alpha- 1). [source:swissprot;acc:p38378]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBE2I\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-like protein sumo-1 conjugating enzyme (ec 6.3.2.19) (sumo- 1-protein ligase) (ubiquitin carrier protein) (ubiquitin-conjugating enzyme ubce2a) (p18). [source:swissprot;acc:p50550]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
59360.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
64250.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.08239\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
311\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AGPAT4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1-acyl-sn-glycerol-3-phosphate acyltransferase delta (ec 2.3.1.51) (1- agp acyltransferase 4) (1-agpat 4) (lysophosphatidic acid acyltransferase-delta) (lpaat-delta) (1-acylglycerol-3-phosphate o- acyltransferase 4). [source:swissprot;acc:q9nrz5]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
30566.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
38866.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27154\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DVL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-3 (dishevelled-3) (dsh homolog 3). [source:swissprot;acc:q92997]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
4981.52\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5964.58\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.19734\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein translation factor sui1 homolog gc20. [source:swissprot;acc:o60739]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.627\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.151\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10108\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, fetal (myosin heavy chain iib) (myhc-iib). [source:swissprot;acc:q9y623]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NUBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nucleotide-binding protein 1 (nbp 1). [source:swissprot;acc:p53384]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7398.26\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7826.48\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05788\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SOAT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sterol o-acyltransferase 1 (ec 2.3.1.26) (cholesterol acyltransferase 1) (acyl coenzyme a:cholesterol acyltransferase 1) (acat-1). [source:swissprot;acc:p35610]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
69.568\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.2622\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0531\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBE1C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1c (uba3 homolog, yeast); ubiquitin-activating enzyme e1c (homologous to yeast uba3). [source:refseq;acc:nm\_003968]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
192.088\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
184.374\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.04184\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
WDR68\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
wd-repeat protein an11 homolog. [source:swissprot;acc:o15491]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
49674.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
45895.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.08234\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
312\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
methyltransferase like 2. [source:refseq;acc:nm\_018396]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm7. [source:swissprot;acc:q9uk45]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
4598.21\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5500.48\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.19622\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
BICD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
coiled-coil protein bicd2; homolog of drosophila bicaudal d. [source:refseq;acc:nm\_015250]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7696.96\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8141.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05777\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
FTSJ3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ftsj homolog 3; likely ortholog of mouse ectoplacental cone, invasive trophoblast giant cells, extraembryonic ectoderm and chorion sequence 3. [source:refseq;acc:nm\_017647]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
50189.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
46383.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.08204\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, perinatal (myhc-perinatal). [source:swissprot;acc:p13535]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RNF10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ring finger protein 10. [source:refseq;acc:nm\_014868]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
69.5675\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
73.2618\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.0531\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPL3L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l3-like. [source:swissprot;acc:q92901]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.195\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
266.663\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10103\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein a' (u2 snrnp-a'). [source:swissprot;acc:p09661]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.051\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
193.937\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.04184\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
313\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ba395l14.12 (novel protein similar to small nuclear ribonucleoprotein polypeptide a' (snrpa1)). [source:sptrembl;acc:q9nu36]\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
202.05\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
193.94\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.04182\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
endo-beta-n-acetylglucosaminidase. [source:refseq;acc:nm\_022759]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
51313.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
47442\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.08161\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
BICD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
bicaudal d homolog 1; bicaudal-d, drosophila, homolog of, 1. [source:refseq;acc:nm\_001714]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
7696.96\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8141.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.05777\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DYNLT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic dynein light chain (t-complex testis-specific protein 1 homolog) (protein cw-1). [source:swissprot;acc:q15763]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/