MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

description	Rank	Gene	Filtered	Value Type	Network Comparison Type	green	Interaction Map	red	network_comparison

Results: HTML CSV LaTeX

Showing element 76524 to 76573 of 77072 in total

description	Rank	Filtered	Value Type	Network Comparison Type	green	Interaction Map	red	network_comparison
zinc finger protein loc163140 (fragment). [sptrembl;acc:q86wm6]	242	0	Rooted	Divided	40.7049	Low confidence	45.298	1.11284
	254		Ranked		4854.79		4257.81	1.14021
	424			Subtracted				596.98
	506		Squared		2301.92		2542.77	240.85
	511			Divided				1.10463
	948	1		Subtracted	54513.3		56615.8	2102.5
	2338			Divided				1.03857
	4027		Measured	Subtracted	9323.2		9143.35	179.85
	4151		Rooted		78.0464		76.1821	1.8643
	4259			Divided				1.02447
	4286		Measured		9323.2		9143.35	1.01967
	4309		Ranked		195.963		197.793	1.00934
	4327			Subtracted				1.83
zinc finger protein mgc21738. [refseq;acc:nm_145044]	90	0	Measured		1969.72		2352.73	383.01
	132		Rooted		40.7356		45.3282	4.5926
	195		Ranked	Divided	4847.6		4251.04	1.14033
	257		Measured		1969.72		2352.73	1.19445
	302		Rooted		40.7356		45.3282	1.11274
	444		Squared	Subtracted	2297.92		2539.82	241.9
	450			Divided				1.10527
	482		Ranked	Subtracted	4847.6		4251.04	596.56
	963	1	Squared		54513.3		56615.7	2102.4
	2318			Divided				1.03857
	4009		Measured	Subtracted	9323.19		9143.34	179.85
	4135		Rooted		78.0464		76.1821	1.8643
	4236			Divided				1.02447
	4263		Measured		9323.19		9143.34	1.01967
	4289		Ranked		195.963		197.793	1.00934
	4307			Subtracted				1.83
zinc finger protein plzf (promyelocytic leukemia zinc finger protein) (zinc finger protein 145). [swissprot;acc:q05516]	1084		Squared		54513.1		56615.4	2102.3
	2426			Divided				1.03857
	3971		Measured	Subtracted	9323.18		9143.31	179.87
	4232		Rooted		78.0463		76.182	1.8643
	4363			Divided				1.02447
	4392		Measured		9323.18		9143.31	1.01967
	4440		Ranked		195.964		197.793	1.00933
	4458			Subtracted				1.829
zinc finger protein slug (neural crest transcription factor slug) (snail homolog 2). [swissprot;acc:o43623]	38	0	Measured	Divided	120.429	High confidence	320.012	2.65727
	39		Squared		5.33358		43.8625	8.22384
	48		Rooted		9.31487		15.0533	1.61605
	81			Subtracted				5.73843
	144		Ranked		13893.1		12225.7	1667.4
	166		Measured		120.429		320.012	199.583
	171	1	Squared		52991.7		69165	16173.3
	172	0	Ranked	Divided	13893.1		12225.7	1.13638
	254	1	Squared		52991.7		69165	1.3052
	313	0		Subtracted	15982.5	Low confidence	15454.4	528.1
	343				5.33358	High confidence	43.8625	38.5289
	362	1		Divided	43251.4	Low confidence	46359.3	1.07186
	405	0	Ranked	Subtracted	10716		11324.8	608.8

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.