Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1632 to 1681 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
408\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
probable serine protease htra3 precursor (ec 3.4.21.-). [source:swissprot;acc:p83110]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18995.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23244.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22368\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
409\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
docking protein 2 (p56(dok-2)) (downstream of tyrosine kinase 2). [source:swissprot;acc:o60496]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 60s ribosomal protein l3 (l3mt). [source:swissprot;acc:p09001]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4409\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.8795\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09942\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rna polymerase i associated factor 53. [source:refseq;acc:nm\_022490]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.045\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.874\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08641\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine protease htra1 precursor (ec 3.4.21.-) (l56). [source:swissprot;acc:q92743]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
18995.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23242.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22359\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
410\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
crk-associated substrate (p130cas) (breast cancer anti-estrogen resistance 1 protein). [source:swissprot;acc:p56945]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
19546.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23881.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22181\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
docking protein 1 (p62(dok)) (downstream of tyrosine kinase 1) (pp62). [source:swissprot;acc:q99704]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phenylalanine-4-hydroxylase (ec 1.14.16.1) (pah) (phe-4- monooxygenase). [source:swissprot;acc:p00439]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p44 subunit (basic transcription factor 2 44 kda subunit) (btf2-p44) (general transcription factor iih polypeptide 2). [source:swissprot;acc:q13888]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0864\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
411\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
pp3111 protein. [source:refseq;acc:nm\_022156]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d3 (snrnp core protein d3) (sm-d3). [source:swissprot;acc:p43331]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17861.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21821.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22174\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p62 subunit (basic transcription factor 62 kda subunit) (btf2-p62) (general transcription factor iih polypeptide 1). [source:swissprot;acc:p32780]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0864\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosine-protein kinase frk (ec 2.7.1.112) (nuclear tyrosine protein kinase rak). [source:swissprot;acc:p42685]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
412\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mki67 (fha domain) interacting nucleolar phosphoprotein; nucleolar phosphoprotein nopp34; nucleolar protein interacting with the fha domain of pki-67. [source:refseq;acc:nm\_032390]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
3594.31\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4169.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16015\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 18. [source:swissprot;acc:q9p2w9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, delta subunit (tcp-1-delta) (cct-delta) (stimulator of tar rna binding). [source:swissprot;acc:p50991]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19556\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23891.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22171\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (ec 1.10.2.2) (rieske iron-sulfur protein) (risp). [source:swissprot;acc:p47985]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.788\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.416\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08567\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
413\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 40 kda polypeptide (ec 2.7.7.6) (rpa40) (rpa39). [source:swissprot;acc:o15160]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
240.913\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08525\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
enhancer of filamentation 1 (hef1) (crk-associated substrate-related protein) (cas-l) (casl) (pp105) (neural precursor cell expressed developmentally down-regulated 9). [source:swissprot;acc:q14511]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19568.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23904.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.2216\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rd protein. [source:swissprot;acc:p18615]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav proto-oncogene. [source:swissprot;acc:p15498]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6644.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7707.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15994\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
414\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
autophagy protein 5-like (apg5-like) (apoptosis-specific protein). [source:swissprot;acc:q9h1y0]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6744.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5815.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22109.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26989.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22071\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutathione transferase omega 1 (ec 2.5.1.18) (gsto 1-1). [source:swissprot;acc:p78417]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p60 subunit a 1. [source:refseq;acc:nm\_007044]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.431\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.238\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08522\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
415\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
androgen-induced 1; cgi-103 protein; androgen induced protein. [source:refseq;acc:nm\_016108]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p80 subunit b 1; katanin (80 kda); katanin p80 (wd40-containing) subunit b 1. [source:refseq;acc:nm\_005886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.382\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.166\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08514\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav-3 protein. [source:swissprot;acc:q9ukw4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6647.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7706.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15927\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vinexin (sh3-containing adaptor molecule-1) (scam-1). [source:swissprot;acc:o60504]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29160.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35570.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21981\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
416\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp synthase b chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p24539]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 135 kda polypeptide (ec 2.7.7.6) (rna polymerase i subunit 2) (rpa135). [source:swissprot;acc:q9h9y6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.041\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08496\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4509.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5223.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15842\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22841.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27856.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21953\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
417\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bag-family molecular chaperone regulator-3 (bcl-2 binding athanogene- 3) (bag-3) (bcl-2-binding protein bis) (docking protein cair-1). [source:swissprot;acc:o95817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4522.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5233.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15708\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
j domain containing protein 1. [source:swissprot;acc:q9ukb3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
repressor of estrogen receptor activity; b-cell associated protein. [source:refseq;acc:nm\_007273]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22841.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27856.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21953\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
set domain and mariner transposase fusion gene. [source:refseq;acc:nm\_006515]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
418\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
breast carcinoma amplified sequence 2; spliceosome associated protein, amplified in breast cancer. [source:refseq;acc:nm\_005872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cd209 antigen-like; putative type ii membrane protein. [source:refseq;acc:nm\_014257]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
e-1 enzyme. [source:refseq;acc:nm\_021204]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
30903.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37638.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21791\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorting nexin 13 (rgs domain- and phox domain-containing protein) (rgs-px1). [source:swissprot;acc:q9y5w8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
419\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
apolipoprotein a-i binding protein; apoa-i binding protein. [source:refseq;acc:nm\_144772]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24832.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30242.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21789\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ba127l20.1 (novel glutathione-s-transferase). [source:sptrembl;acc:q9h4y5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
low affinity immunoglobulin epsilon fc receptor (lymphocyte ige receptor) (fc-epsilon-rii) (cd23) (blast-2) (immunoglobulin e-binding factor). [source:swissprot;acc:p06734]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
420\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l24 (l30). [source:swissprot;acc:p38663]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
30924.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37652.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21756\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cd209 antigen; dendritic cell-specific icam3-grabbing nonintegrin. [source:refseq;acc:nm\_021155]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna polymerase epsilon, catalytic subunit a (ec 2.7.7.7) (dna polymerase ii subunit a). [source:swissprot;acc:q07864]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.7959\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.9253\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09903\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10235.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11830.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15589\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
421\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [source:sptrembl;acc:q9br02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4666\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9317\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09873\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/