MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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description	Rank	green	Gene	Value Type	Interaction Map	Network Comparison Type	Filtered	red	network_comparison

Results: HTML CSV LaTeX

Showing element 501 to 550 of 12912 in total

Interaction Map  : High confidence
Network Comparison Type  : Divided
Filtered  : 1

description	Rank	green	Value Type	red	network_comparison
60s ribosomal protein l14 (cag-isl 7). [swissprot;acc:p50914]	306	266.673	Ranked	242.153	1.10126
	387	45.6718	Rooted	50.3345	1.10209
	2003	13562.6	Squared	12429.9	1.09113
	2074	3423.89	Measured	3614.91	1.05579
60s ribosomal protein l15. [swissprot;acc:p39030]	604	230.978	Ranked	217.862	1.0602
	1089	20351.7	Squared	17766.4	1.14552
	2238	57.9477	Rooted	59.1718	1.02112
	2532	5006.1	Measured	4888.72	1.02401
60s ribosomal protein l17 (l23). [swissprot;acc:p18621]	281	267.335	Ranked	241.808	1.10557
	343	45.4333	Rooted	50.3169	1.10749
	1894	3384.59	Measured	3598.08	1.06308
	2212	13390.2	Squared	12360.4	1.08331
60s ribosomal protein l18. [swissprot;acc:q07020]	485	254.667	Ranked	237.109	1.07405
	969	50.0947	Rooted	52.9804	1.0576
	1618	17067.9	Squared	15399.5	1.10834
	2694	4095.53	Measured	4113.79	1.00446
60s ribosomal protein l18a. [swissprot;acc:q02543]	770	59.3786	Rooted	55.6817	1.06639
	806	5226.71	Measured	4708.61	1.11003
	860	224.958	Ranked	234.025	1.04031
	1128	21540.4	Squared	18854.4	1.14246
60s ribosomal protein l19. [swissprot;acc:p14118]	319	264.729	Ranked	240.73	1.09969
	435	46.3081	Rooted	50.832	1.09769
	2054	13918.3	Squared	12769	1.09001
	2136	3499.2	Measured	3687.49	1.05381
60s ribosomal protein l21. [swissprot;acc:p46778]	1051	63.2237	Rooted	60.1366	1.05133
	1054	217.263	Ranked	223.958	1.03082
	1510	5957.99	Measured	5546.11	1.07426
	2453	26738.9	Squared	25226.2	1.05997
60s ribosomal protein l22 (epstein-barr virus small rna associated protein) (eber associated protein) (eap) (heparin binding protein hbp15). [swissprot;acc:p35268]	2205	200.413	Ranked	199.129	1.00645
	2530	36568.4	Squared	38544.3	1.05403
	2667	72.5201	Rooted	72.1844	1.00465
	2673	7741.14	Measured	7780.98	1.00515
60s ribosomal protein l23 (l17). [swissprot;acc:p23131]	293	265.717	Ranked	240.782	1.10356
	384	46.0607	Rooted	50.7723	1.10229
	1838	13887.8	Squared	12666.8	1.09639
	2115	3482.34	Measured	3672.49	1.0546
60s ribosomal protein l23a. [swissprot;acc:p29316]	323	265.945	Ranked	241.884	1.09947
	424	45.9373	Rooted	50.4703	1.09868
	1950	13806.3	Squared	12632.4	1.09293
	2175	3463.88	Measured	3642.13	1.05146
60s ribosomal protein l24 (l30). [swissprot;acc:p38663]	420	37652.3	Squared	30924.3	1.21756
	727	7911.25	Measured	7087.23	1.11627
	1128	73.3177	Rooted	69.8977	1.04893
	1767	198.86	Ranked	201.288	1.01221
60s ribosomal protein l26. [swissprot;acc:q02877]	302	267.008		242.326	1.10185
	374	45.5599	Rooted	50.2549	1.10305
	1997	13513	Squared	12380.1	1.09151
	2051	3409.48	Measured	3601.97	1.05646
60s ribosomal protein l28. [swissprot;acc:p46779]	1506	65.4287	Rooted	63.0816	1.03721
	1548	6423.52	Measured	5987.29	1.07286

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.