Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1373 to 1422 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
344\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s2 (s4) (llrep3 protein). [source:swissprot;acc:p15880]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
241.625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.136\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0973\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
IDH2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nadp], mitochondrial precursor (ec 1.1.1.42) (oxalosuccinate decarboxylase) (idh) (nadp+-specific icdh) (idp) (icd-m). [source:swissprot;acc:p48735]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37226.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
46400.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24641\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPAN-P2RY11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
suppressor of swi4 1 homolog (ssf-1) (peter pan homolog). [source:swissprot;acc:q9nq55]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.4233\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
54.7327\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10743\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
345\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CMPK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ump-cmp kinase (ec 2.7.4.14) (cytidylate kinase) (deoxycytidylate kinase) (cytidine monophosphate kinase). [source:swissprot;acc:p30085]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.697\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
DHX15\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative pre-mrna splicing factor rna helicase (deah box protein 15) (atp-dependent rna helicase #46). [source:swissprot;acc:o43143]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.2615\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
62.2958\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10725\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
HSD17B14\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
retinal short-chain dehydrogenase/reductase 3. [source:refseq;acc:nm\_016246]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SH3GL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sh3-containing grb2-like protein 1 (sh3 domain protein 2b) (extra eleven-nineteen leukemia fusion gene) (een) (een fusion partner of mll). [source:swissprot;acc:q99961]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
35793\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
44595.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24592\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
346\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CSE1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
importin-alpha re-exporter (chromosome segregation 1-like protein) (cellular apoptosis susceptibility protein). [source:swissprot;acc:p55060]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
34018.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42373\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24559\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GRAP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
grb2-related adaptor protein. [source:swissprot;acc:q13588]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.4282\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
68.0107\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10716\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPS3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s3. [source:swissprot;acc:p23396]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
241.612\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.119\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
septin 1 (larp) (serologically defined breast cancer antigen ny-br- 24). [source:swissprot;acc:q8wyj6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14229.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
16780.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17931\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
347\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AK3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gtp:amp phosphotransferase mitochondrial (ec 2.7.4.10) (ak3) (adenylate kinase 3 alpha like 1). [source:swissprot;acc:q9uij7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.697\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRSS7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
enteropeptidase precursor (ec 3.4.21.9) (enterokinase). [source:swissprot;acc:p98073]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4991.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5885.09\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17914\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d2 (snrnp core protein d2) (sm-d2). [source:swissprot;acc:p43330]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
16573.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
20637.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24522\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TIPRL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cg9578-like; yeast ypr037w and worm c02c2.6 predicted proteins-like. [source:refseq;acc:nm\_152902]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.4284\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60.0004\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10713\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
348\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 4, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p27144]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GORASP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
golgi reassembly stacking protein 2; golgi reassembly stacking protein 2, 55 kda. [source:refseq;acc:nm\_015530]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42566.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
52985.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24477\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NOC3L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ad24 protein. [source:refseq;acc:nm\_022451]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.2558\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
54.5235\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10695\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF3B2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 2 (spliceosome associated protein 145) (sap 145) (sf3b150) (pre-mrna splicing factor sf3b 145 kda subunit). [source:swissprot;acc:q13435]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
4991.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5885.09\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17914\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
349\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DHX15\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative pre-mrna splicing factor rna helicase (deah box protein 15) (atp-dependent rna helicase #46). [source:swissprot;acc:o43143]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4714.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5554.38\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17806\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
LSM4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm4 (glycine-rich protein) (grp). [source:swissprot;acc:q9y4z0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.0061\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
61.9704\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10649\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MED22\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
surfeit locus protein 5. [source:swissprot;acc:q15528]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SH3GL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sh3-containing grb2-like protein 2 (sh3 domain protein 2a) (endophilin 1) (een-b1). [source:swissprot;acc:q99962]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
35533.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
44227\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24464\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
350\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARMET\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
armet protein precursor (arginine-rich protein). [source:swissprot;acc:p55145]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
35508.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
44191.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24452\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NAV2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuron navigator 2 isoform l; retinoic acid inducible in neuroblastoma; pore membrane and/or filament interacting like protein 2; helicase helad1. [source:refseq;acc:nm\_145117]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.3383\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
67.8668\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10643\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SCAPER\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein 291. [source:swissprot;acc:q9by12]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ZNF547\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
17396.9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
20483.9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1.17745\vspace{3pt}}}\\\cline{1-3}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
351\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ANKS1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
e2a-pbx1-associated protein; putative 47 kda protein. [source:refseq;acc:nm\_020140]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.3352\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
67.8618\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10641\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
HDC\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
histidine decarboxylase (ec 4.1.1.22) (hdc). [source:swissprot;acc:p19113]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35508.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
44191.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24452\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PEX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisome biogenesis factor 1 (peroxin-1) (peroxisome biogenesis disorder protein 1). [source:swissprot;acc:o43933]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
352\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30682.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
38183.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24446\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NAV1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuron navigator 1; neuron navigator-1; pore membrane and/or filament interacting like protein 3. [source:refseq;acc:nm\_020443]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.3354\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
67.8621\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10641\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TRAPPC3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
bet3 homolog. [source:swissprot;acc:o43617]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17396.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
20483.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17745\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TXNDC9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein 1-4 (atp binding protein associated with cell differentiation). [source:swissprot;acc:o14530]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
353\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
GATAD2A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
p66 alpha. [source:refseq;acc:nm\_017660]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12839\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10911.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17669\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GIPC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rgs19-interacting protein 1 (gaip c-terminus interacting protein gipc) (rgs-gaip interacting protein) (tax interaction protein 2) (tip-2). [source:swissprot;acc:o14908]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
231.73\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
211.252\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09694\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NAV3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3. [source:refseq;acc:nm\_014903]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.3354\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
67.8623\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10641\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NONO\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
54 kda nuclear rna- and dna-binding protein (p54(nrb)) (p54nrb) (55 kda nuclear protein) (nmt55) (non-pou domain-containing octamer- binding protein) (dna-binding p52/p100 complex, 52 kda subunit). [source:swissprot;acc:q15233]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71383\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
57399.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24362\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
354\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
GATAD2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription repressor p66 beta component of the mecp1 complex. [source:refseq;acc:nm\_020699]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12839\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10911.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17669\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSPC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
paraspeckle protein 1. [source:refseq;acc:nm\_018282]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71360.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
57385.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24352\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
STX10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 10 (syn10). [source:swissprot;acc:o60499]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
257.442\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09694\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
WDR12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
wd-repeat protein 12 (ytm1 homolog). [source:swissprot;acc:q9gzl7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.2848\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
54.5246\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10632\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
355\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tyrosine aminotransferase (ec 2.6.1.5) (l-tyrosine:2-oxoglutarate aminotransferase) (tat). [source:swissprot;acc:p17735]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12839\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10911.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17669\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRSS7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
enteropeptidase precursor (ec 3.4.21.9) (enterokinase). [source:swissprot;acc:p98073]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58.0752\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
64.23\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10598\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
STX6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 6. [source:swissprot;acc:o43752]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
257.414\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09691\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
UNC84A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sad1/unc-84 protein-like 1. [source:swissprot;acc:o94901]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15588.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
19381.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24337\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
356\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l10a (csa-19). [source:swissprot;acc:p53025]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.796\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09684\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF3B2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 2 (spliceosome associated protein 145) (sap 145) (sf3b150) (pre-mrna splicing factor sf3b 145 kda subunit). [source:swissprot;acc:q13435]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58.0752\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
64.23\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10598\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/