Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1230 to 1279 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
308\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l34. [source:swissprot;acc:p49207]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
density-regulated protein (drp) (drp1 protein) (smooth muscle cell associated protein-3) (smap-3). [source:swissprot;acc:o43583]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4687\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.2733\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11476\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-1 (dishevelled-1) (dsh homolog 1). [source:swissprot;acc:o14640]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4977.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5966.44\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19878\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
309\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat displacement protein (cdp) (cut-like 1). [source:swissprot;acc:p39880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28900.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36762.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27203\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-2 (dishevelled-2) (dsh homolog 2). [source:swissprot;acc:o14641]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4977.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5966.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19855\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm2 (small nuclear ribonuclear protein d homolog) (g7b) (snrnp core sm-like protein sm-x5). [source:swissprot;acc:q9y333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.185\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6036\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11424\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
310\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein cux-2 (cut-like 2) (fragment). [source:swissprot;acc:o14529]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28901.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36762.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27198\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle alpha isoform (myhc-alpha). [source:swissprot;acc:p13533]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein transport protein sec61 alpha subunit isoform 1 (sec61 alpha- 1). [source:swissprot;acc:p38378]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
squamous cell carcinoma antigen recognized by t cells 1; u4/u6.u5 tri-snrnp-associated 110 kda protein; ige autoantigen; sart1(259) protein; sart1(800) protein. [source:refseq;acc:nm\_005146]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4909.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5878.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19736\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
311\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
1-acyl-sn-glycerol-3-phosphate acyltransferase delta (ec 2.3.1.51) (1- agp acyltransferase 4) (1-agpat 4) (lysophosphatidic acid acyltransferase-delta) (lpaat-delta) (1-acylglycerol-3-phosphate o- acyltransferase 4). [source:swissprot;acc:q9nrz5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
30566.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
38866.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27154\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, fetal (myosin heavy chain iib) (myhc-iib). [source:swissprot;acc:q9y623]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein translation factor sui1 homolog gc20. [source:swissprot;acc:o60739]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.627\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
267.151\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10108\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-3 (dishevelled-3) (dsh homolog 3). [source:swissprot;acc:q92997]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4981.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5964.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19734\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
312\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l3-like. [source:swissprot;acc:q92901]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.195\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.663\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10103\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
methyltransferase like 2. [source:refseq;acc:nm\_018396]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, perinatal (myhc-perinatal). [source:swissprot;acc:p13535]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm7. [source:swissprot;acc:q9uk45]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4598.21\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5500.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19622\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
313\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic dynein light chain (t-complex testis-specific protein 1 homolog) (protein cw-1). [source:swissprot;acc:q15763]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, adult 2 (myosin heavy chain iia) (myhc-iia). [source:swissprot;acc:q9ukx2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase inhibitor 2 (ipp-2). [source:swissprot;acc:p41236]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21644.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18098.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1959\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribonucleotide reductase m2 b (tp53 inducible); p53-inducible ribonucleotide reductase small subunit 2 homolog. [source:refseq;acc:nm\_015713]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.473\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.207\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10069\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
314\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
fzr1 protein; fizzy-related protein; cdc20-like 1b. [source:refseq;acc:nm\_016263]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
methionine aminopeptidase 1 (ec 3.4.11.18) (metap 1) (map 1) (peptidase m 1). [source:swissprot;acc:p53582]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.126\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
268.604\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10027\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, fast skeletal muscle, embryonic (muscle embryonic myosin heavy chain) (smhce). [source:swissprot;acc:p11055]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
type 1 protein phosphatase inhibitor. [source:refseq;acc:nm\_025210]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21632.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18090\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19583\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
315\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
methionine aminopeptidase 2 (ec 3.4.11.18) (metap 2) (peptidase m 2) (initiation factor 2 associated 67 kda glycoprotein) (p67) (p67eif2). [source:swissprot;acc:p50579]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.126\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
268.604\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10027\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, adult 1 (myosin heavy chain iix/d) (myhc-iix/d). [source:swissprot;acc:p12882]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
proprotein convertase subtilisin/kexin type 5 precursor (ec 3.4.21.-) (proprotein convertase pc5) (subtilisin/kexin-like protease pc5) (convertase pc5) (pc6) (hpc6). [source:swissprot;acc:q92824]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosome biogenesis regulatory protein homolog. [source:swissprot;acc:q15050]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21370.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17896.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19413\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
316\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle beta isoform (myhc-beta). [source:swissprot;acc:p12883]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neural wiskott-aldrich syndrome protein (n-wasp). [source:swissprot;acc:o00401]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28918.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36746\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27068\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein translation factor sui1 homolog (sui1iso1). [source:swissprot;acc:p41567]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.694\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
267.017\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10022\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase pp1-alpha 1 catalytic subunit (ec 3.1.3.16) (pp-1a). [source:swissprot;acc:p08129]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
21370.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17896.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19413\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
317\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adiponectin receptor 2. [source:refseq;acc:nm\_024551]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
3153.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3762.56\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19329\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dj756n5.1.1 (continues in em:al133324 as dj1161h23.3) (fragment). [source:sptrembl;acc:q9h430]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleoside diphosphate kinase 3 (ec 2.7.4.6) (ndk 3) (ndp kinase 3) (nm23-h3) (dr-nm23). [source:swissprot;acc:q13232]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
33982.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
43159.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27005\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.445\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.044\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09998\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
318\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 60s ribosomal protein l3 (l3mt). [source:swissprot;acc:p09001]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
242.011\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09987\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial import receptor subunit tom20 homolog (mitochondrial 20 kda outer membrane protein) (outer mitochondrial membrane receptor tom20). [source:swissprot;acc:q15388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
46739.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59134.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.26518\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, extraocular (myhc-eo). [source:swissprot;acc:q9ukx3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
34190.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40795.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19318\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
319\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l19. [source:swissprot;acc:p14118]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
264.729\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09969\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
peroxisomal farnesylated protein (33 kda housekeeping protein) (peroxin 19). [source:swissprot;acc:p40855]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
46739.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59134.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.26518\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related gtp binding a; ras-related gtp-binding protein. [source:refseq;acc:nm\_006570]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20911\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24908.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19117\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
49.0663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
54.4978\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1107\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
320\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s29. [source:swissprot;acc:p30054]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
50.2784\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.294\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11005\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
epithelial-cadherin precursor (e-cadherin) (uvomorulin) (cadherin-1) (cam 120/80). [source:swissprot;acc:p12830]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.892\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.96\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0995\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
epoxide hydrolase 1 (ec 3.3.2.3) (microsomal epoxide hydrolase) (epoxide hydratase). [source:swissprot;acc:p07099]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
87971.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69563.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.26463\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/