MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Rank	Network Comparison Type	Gene	Hugo	description	Value Type	Interaction Map	Filtered	network_comparison	red	green

Results: HTML CSV LaTeX

Showing element 1186 to 1235 of 1892 in total

Network Comparison Type  : Subtracted
Interaction Map  : High confidence
Filtered  : 1
network_comparison  : 0
red  : 0
green  : 0

Rank	Hugo	description	Value Type
3052	PDCD10	programmed cell death 10; apoptosis-related protein 15. [refseq;acc:nm_007217]	Ranked
			Squared
			Rooted
3053	HGD	homogentisate 1,2-dioxygenase (ec 1.13.11.5) (homogentisicase) (homogentisate oxygenase) (homogentisic acid oxidase). [swissprot;acc:q93099]	Measured
			Ranked
			Squared
			Rooted
3054	ZNF346	double-stranded rna-binding zinc finger protein jaz. [refseq;acc:nm_012279]	Measured
			Ranked
			Squared
			Rooted
3055	ATP6V0E1	vacuolar atp synthase subunit h (ec 3.6.3.14) (v-atpase h subunit) (vacuolar proton pump h subunit) (v-atpase m9.2 subunit) (v-atpase 9.2 kda membrane accessory protein). [swissprot;acc:o15342]	Measured
			Ranked
			Squared
			Rooted
3056	SEC24A	protein transport protein sec24a (sec24-related protein a) (fragment). [swissprot;acc:o95486]	Measured
			Ranked
			Squared
			Rooted
3057	C9	complement component c9 precursor. [swissprot;acc:p02748]	Measured
			Ranked
			Squared
			Rooted
3058	GNPDA1	glucosamine-6-phosphate isomerase (ec 3.5.99.6) (glucosamine-6- phosphate deaminase) (gnpda) (glcn6p deaminase) (oscillin). [swissprot;acc:p46926]	Measured
			Ranked
			Squared
			Rooted
3059	RNASEN	ribonuclease iii (ec 3.1.26.3) (rnase iii) (p241). [swissprot;acc:q9nrr4]	Measured
			Ranked
			Squared
			Rooted
3060	TTC1	tetratricopeptide repeat protein 1 (tpr repeat protein 1). [swissprot;acc:q99614]	Measured
			Ranked
			Squared
			Rooted
3061	CNOT6	kiaa1194. [refseq;acc:nm_015455]	Measured
			Ranked
			Squared
			Rooted
3062	SPARC	sparc precursor (secreted protein acidic and rich in cysteine) (osteonectin) (on) (basement membrane protein bm-40). [swissprot;acc:p09486]	Measured
			Ranked
			Squared
			Rooted
3063	MRPS30	mitochondrial 28s ribosomal protein s30 (s30mt) (mrp-s30) (programmed cell death protein 9) (bm047). [swissprot;acc:q9np92]	Measured
			Ranked
			Squared
			Rooted
3064	C7	complement component c7 precursor. [swissprot;acc:p10643]	Measured
			Ranked
			Squared

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.