MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

description	Rank	Gene	Network Comparison Type	Value Type	Hugo	Interaction Map	red	Filtered	green	network_comparison

Results: HTML CSV LaTeX

Showing element 65324 to 65373 of 66312 in total

Filtered  : 1

description	Rank	Network Comparison Type	Value Type	Hugo	Interaction Map	red	green	network_comparison
zinc finger protein 304. [swissprot;acc:q9hcx3]	4216	Subtracted	Rooted	ZNF304	Low confidence	76.1821	78.0464	1.8643
	4342	Divided						1.02447
	4371		Measured			9143.34	9323.19	1.01967
	4376		Ranked			197.793	195.963	1.00934
	4395	Subtracted						1.83
zinc finger protein 305. [swissprot;acc:o43309]	870			ZSCAN12	High confidence	269.954	278.219	8.265
	1065	Divided						1.03062
	1278	Subtracted	Squared		Low confidence	46670.2	44672.3	1997.9
	1323	Divided						1.04472
	2480		Measured		High confidence	3568.95	3676.56	1.03015
	2545	Subtracted						107.61
	2657	Divided	Squared			17923.9	17435.6	1.02801
	2668	Subtracted						488.3
	2698	Divided	Rooted			44.5858	44.4426	1.00322
	2704	Subtracted						0.1432
	4115	Divided	Measured		Low confidence	7962.38	8131.23	1.02121
	4275	Subtracted						168.85
	4451	Divided	Rooted			70.8504	72.5146	1.02349
	4472	Subtracted						1.6642
	4848		Ranked			206.479	205.846	0.633
	4850	Divided						1.00308
zinc finger protein 31. [refseq;acc:nm_145238]	1046	Subtracted	Squared	ZSCAN20		56615.7	54513.3	2102.4
	2421	Divided						1.03857
	4094	Subtracted	Measured			9143.34	9323.19	179.85
	4228		Rooted			76.1821	78.0464	1.8643
	4358	Divided						1.02447
	4387		Measured			9143.34	9323.19	1.01967
	4389		Ranked			197.793	195.963	1.00934
	4408	Subtracted						1.83
zinc finger protein 319. [swissprot;acc:q9p2f9]	1098		Squared	ZNF319		56615.4	54513.2	2102.2
	2460	Divided						1.03856
	3988	Subtracted	Measured			9143.32	9323.18	179.86
	4184		Rooted			76.182	78.0463	1.8643
	4303	Divided						1.02447
	4330		Measured			9143.32	9323.18	1.01967
	4431		Ranked			197.793	195.964	1.00933
	4449	Subtracted						1.829
zinc finger protein 32 (zinc finger protein kox30) (fragment). [swissprot;acc:p17041]	1072		Squared	no value		56615.5	54513.2	2102.3
	2453	Divided						1.03856
	3981	Subtracted	Measured			9143.32	9323.18	179.86
	4154		Rooted			76.182	78.0463	1.8643
	4263	Divided						1.02447
	4290		Measured			9143.32	9323.18	1.01967
	4422		Ranked			197.793	195.964	1.00933
	4440	Subtracted						1.829
zinc finger protein 324 (zinc finger protein zf5128). [swissprot;acc:o75467]	1060		Squared	ZNF324		56615.6	54513.2	2102.4
	2438	Divided						1.03857
	4110	Subtracted	Measured			9143.34	9323.19	179.85
	4288		Rooted			76.1821	78.0463	1.8642
	4379	Divided						1.02447

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.