MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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description	Filtered	Gene	Value Type	Rank	Network Comparison Type	network_comparison	green	Interaction Map	red

Results: HTML CSV LaTeX

Showing element 1 to 50 of 38536 in total

Network Comparison Type  : Divided

description	Filtered	Value Type	Rank	network_comparison	green	Interaction Map	red
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [swissprot;acc:q04446]	0	Measured	37	2.79409	934.348	High confidence	334.401
			131	1.31954	851.77	Low confidence	645.504
		Ranked	242	1.09822	13895.8	High confidence	15260.6
			629	1.02915	13590.3	Low confidence	13205.3
		Squared	37	10.2338	1034.13	High confidence	101.05
			146	1.63527	1268.51	Low confidence	775.72
		Rooted	53	1.5213	18.0183	High confidence	11.844
			537	1.04801	17.0804	Low confidence	16.298
	1	Measured	60	1.6231	2765.82	High confidence	4489.19
			4914	1.00597	7900.54	Low confidence	7853.62
		Ranked	18	1.32082	245.247	High confidence	185.678
			4130	1.01062	201.5	Low confidence	199.383
		Squared	245	1.31131	6768.05	High confidence	8875.01
			1119	1.04654	41688.5	Low confidence	43628.5
		Rooted	64	1.35128	47.2654	High confidence	63.8686
			4914	1.00944	72.6287	Low confidence	71.9496
1-acyl-sn-glycerol-3-phosphate acyltransferase alpha (ec 2.3.1.51) (1- agp acyltransferase 1) (1-agpat 1) (lysophosphatidic acid acyltransferase-alpha) (lpaat-alpha) (1-acylglycerol-3-phosphate o- acyltransferase 1) (g15 protein). [swissprot;acc:q99943]		Measured	509	1.14278	8630.06	High confidence	7551.8
			885	1.03993	8585.64	Low confidence	8255.95
		Ranked	1038	1.03148	181.041	High confidence	186.741
			1328	1.02218	194.038	Low confidence	198.342
		Squared	295	1.27733	39351.7	High confidence	30807.7
			4562	1.01928	45736	Low confidence	46617.7
		Rooted	805	1.0645	79.1513	High confidence	74.3557
			1092	1.0386	76.3375	Low confidence	73.5001
1-acyl-sn-glycerol-3-phosphate acyltransferase beta (ec 2.3.1.51) (1- agp acyltransferase 2) (1-agpat 2) (lysophosphatidic acid acyltransferase-beta) (lpaat-beta) (1-acylglycerol-3-phosphate o- acyltransferase 2). [swissprot;acc:o15120]		Measured	508	1.14293	8636.87	High confidence	7556.75
			880	1.04001	8587.03	Low confidence	8256.68
		Ranked	1032	1.03162	180.943	High confidence	186.664
			1322	1.0222	194.014	Low confidence	198.322
		Squared	294	1.2776	39383.9	High confidence	30826.5
			4569	1.01914	45740.5	Low confidence	46616.1
		Rooted	804	1.0646	79.1931	High confidence	74.3877
			1084	1.03863	76.3467	Low confidence	73.5068
1-acyl-sn-glycerol-3-phosphate acyltransferase delta (ec 2.3.1.51) (1- agp acyltransferase 4) (1-agpat 4) (lysophosphatidic acid acyltransferase-delta) (lpaat-delta) (1-acylglycerol-3-phosphate o- acyltransferase 4). [swissprot;acc:q9nrz5]		Measured	237	1.06457	9081.29		8530.51
			514	1.1411	8532.02	High confidence	7477
		Ranked	588	1.03039	185.859	Low confidence	191.507
			1048	1.031	182.308	High confidence	187.96
		Squared	311	1.27154	38866.5		30566.4
			4138	1.02676	47372.8	Low confidence	46138.2
		Rooted	378	1.04871	79.5804		75.8843
			822	1.06393	78.5795	High confidence	73.8577
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (ec 2.3.1.51) (1- agp acyltransferase 3) (1-agpat 3) (lysophosphatidic acid acyltransferase-gamma) (lpaat-gamma) (1-acylglycerol-3-phosphate o- acyltransferase 3). [swissprot;acc:q9nrz7]		Measured	252	1.06194	9018.94	Low confidence	8492.92
			513	1.14143	8543.66	High confidence	7485.08
		Ranked	637	1.029	186.751	Low confidence	192.166
			1043	1.03128	182.137	High confidence	187.834
		Squared	308	1.27205	38919.9		30596.2
			4418	1.02256	47088.3	Low confidence	46049.4
		Rooted	427	1.04731	79.1997		75.6219
			811	1.06415	78.6514	High confidence	73.9102
1-aminocyclopropane-1-carboxylate synthase. [refseq;acc:nm_032592]		Measured	2035	1.03199	8323.04	Low confidence	8065.05
		Ranked	3423	1.01523	196.707		199.702

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.