MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Filtered	description	Gene	Value Type	Rank	Network Comparison Type	green	network_comparison	Interaction Map	red

Results: HTML CSV LaTeX

Showing element 1 to 50 of 77072 in total

Filtered  : 0

description	Value Type	Rank	Network Comparison Type	green	network_comparison	Interaction Map	red
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [swissprot;acc:q04446]	Measured	37	Divided	934.348	2.79409	High confidence	334.401
		45	Subtracted		599.947
		131	Divided	851.77	1.31954	Low confidence	645.504
		273	Subtracted		206.266
	Ranked	172		13895.8	1364.8	High confidence	15260.6
		242	Divided		1.09822
		600	Subtracted	13590.3	385	Low confidence	13205.3
		629	Divided		1.02915
	Squared	37		1034.13	10.2338	High confidence	101.05
		131	Subtracted		933.08
		146	Divided	1268.51	1.63527	Low confidence	775.72
		319	Subtracted		492.79
	Rooted	53	Divided	18.0183	1.5213	High confidence	11.844
		69	Subtracted		6.1743
		537	Divided	17.0804	1.04801	Low confidence	16.298
		634	Subtracted		0.7824
17-beta-hydroxysteroid dehydrogenase type vii-like. [refseq;acc:nm_182829]	Measured	627		4869.42	43.53		4825.89
		778	Divided		1.00902
	Ranked	627		10050.9	1.02953		10347.7
		641	Subtracted		296.8
	Squared	536		40451	180.2		40270.8
		815	Divided		1.00447
	Rooted	726	Subtracted	39.5126	0.4144		39.0982
		768	Divided		1.0106
25-hydroxyvitamin d-1 alpha hydroxylase, mitochondrial precursor (ec 1.14.-.-) (25-ohd-1 alpha-hydroxylase) (25-hydroxyvitamin d3 1- alpha-hydroxylase) (vd3 1a hydroxylase) (p450c1 alpha) (p450vd1- alpha). [swissprot;acc:o15528]	Measured	19		26.1599	11.6763	High confidence	305.45
		115	Subtracted		279.29
		171	Divided	181.734	1.22585	Low confidence	222.779
		635	Subtracted		41.045
	Ranked	28		18499.2	5557.5	High confidence	12941.7
		47	Divided		1.42943
		220	Subtracted	14695.2	1162.1	Low confidence	13533.1
		384	Divided		1.08587
	Squared	26		0.344399	128.828	High confidence	44.3683
		336	Subtracted		44.0239
		697	Divided	296.481	1.03806	Low confidence	307.765
		749	Subtracted		11.284
	Rooted	26	Divided	3.80565	3.62106	High confidence	13.7805
		28	Subtracted		9.97485
		131	Divided	9.42485	1.20585	Low confidence	11.365
		376	Subtracted		1.94015
26s proteasome non-atpase regulatory subunit 10 (26s proteasome regulatory subunit p28) (gankyrin). [swissprot;acc:o75832]	Measured	380		2642.79	40.82	High confidence	2683.61
		451	Divided		1.01545
		762	Subtracted	1609.88	16.2	Low confidence	1593.68
		771	Divided		1.01017
	Ranked	378	Subtracted	10806	422.4	High confidence	11228.4
		379	Divided		1.03909
		822	Subtracted	11854.2	21.4	Low confidence	11832.8
		825	Divided		1.00181
	Squared	104	Subtracted	7355.46	1264.81	High confidence	8620.27
		316	Divided		1.17196

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.