MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Filtered	Gene	description	Value Type	Rank	Network Comparison Type	network_comparison	Interaction Map	green	red

Results: HTML CSV LaTeX

Showing element 101 to 150 of 38536 in total

Filtered  : 0
Network Comparison Type  : Divided

description	Value Type	Rank	network_comparison	Interaction Map	green	red
40s ribosomal protein s26. [swissprot;acc:p02383]	Measured	58	1.85588	High confidence	81.2233	150.741
		627	1.03073	Low confidence	2484.72	2410.65
	Ranked	112	1.1982	High confidence	17098	14269.7
		524	1.05312	Low confidence	11262.9	10694.8
	Squared	152	1.67729	High confidence	5.24885	8.80383
		728	1.02434	Low confidence	21304.5	21823.1
	Rooted	43	1.75134	High confidence	5.66499	9.92134
		820	1.0023	Low confidence	26.7508	26.6893
40s ribosomal protein s27 (metallopan-stimulin 1) (mps-1). [swissprot;acc:p42677]	Measured	444	1.02223	High confidence	2378.99	2431.87
		609	1.03491	Low confidence	1650.32	1594.65
	Ranked	380	1.0387	High confidence	9936.37	9566.15
		619	1.0306	Low confidence	10278.1	9972.93
	Squared	472	1.01255	High confidence	6524	6605.9
		705	1.03426	Low confidence	4228.5	4088.42
	Rooted	395	1.03421	High confidence	30.9731	32.0326
		836	1.00023	Low confidence	27.1942	27.188
40s ribosomal protein s28. [swissprot;acc:p25112]	Measured	385	1.04615	High confidence	405.367	387.486
		550	1.05276	Low confidence	936.963	890.008
	Ranked	258	1.09459	High confidence	14193.6	12967.1
		612	1.03359	Low confidence	11459	11843.9
	Squared	304	1.19893	High confidence	879.603	1054.58
		790	1.00964	Low confidence	3503.57	3470.13
	Rooted	285	1.08467	High confidence	12.5026	13.5612
		468	1.06383	Low confidence	19.6324	18.4544
40s ribosomal protein s29. [swissprot;acc:p30054]	Measured	297	1.10737	High confidence	1895.38	1711.6
		356	1.12795	Low confidence	2217.3	1965.77
	Ranked	225	1.10378	High confidence	9997.71	11035.3
		729	1.0145	Low confidence	10653.8	10808.3
	Squared	203	1.32724		9439.12	7111.83
		305	1.19472	High confidence	6326.82	5295.67
	Rooted	265	1.0985		28.6733	26.1023
		554	1.04577	Low confidence	28.6337	27.3804
40s ribosomal protein s3a. [swissprot;acc:p49241]	Measured	439	1.08345		2069.56	1910.16
		447	1.01735	High confidence	2879.55	2929.51
	Ranked	331	1.05644		10992.4	10405.1
		786	1.00719	Low confidence	13148.4	13242.9
	Squared	241	1.25308		14964.4	11942.1
		473	1.01195	High confidence	8550.86	8653.02
	Rooted	404	1.03159		32.9781	34.0198
		792	1.00597	Low confidence	21.5465	21.4186
40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [swissprot;acc:p12750]	Measured	255	1.1346	High confidence	1495.22	1317.84
		416	1.09339	Low confidence	1653.68	1512.43
	Ranked	261	1.09259	High confidence	11393.9	12448.9
		444	1.0741	Low confidence	11211.6	12042.4
	Squared	273	1.24367	High confidence	5253.37	4224.07
		315	1.16333	Low confidence	6012.92	5168.71
	Rooted	258	1.10441	High confidence	23.34	21.1334
		424	1.07638	Low confidence	24.652	22.9027
40s ribosomal protein s4, y isoform 2. [swissprot;acc:q8td47]	Measured	254	1.13461	High confidence	1495.66	1318.22
		415	1.09373	Low confidence	1651.01	1509.52

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.