MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Gene	Rank	description	Network Comparison Type	Interaction Map	Value Type	Filtered	green	red	network_comparison

Results: HTML CSV LaTeX

Showing element 1 to 16 of 16 in total

Interaction Map  : High confidence
Value Type  : Measured
Filtered  : 1
green  : 1390.33
red  : 779.167

Rank	description	Network Comparison Type	network_comparison
46	neurogenic differentiation factor 2 (neurod2). [swissprot;acc:q15784]	Divided	1.78438
47	chromodomain helicase-dna-binding protein 3 (chd-3) (mi-2 autoantigen 240 kda protein) (mi2-alpha). [swissprot;acc:q12873]
48	doc-1 related protein (doc-1r). [swissprot;acc:o75956]
49	neurogenic differentiation factor 6 (neurod6) (my051 protein). [swissprot;acc:q96nk8]
50	neurogenic differentiation factor 1 (neurod1) (neurod). [swissprot;acc:q13562]
51	neurogenic differentiation factor 4 (neurod4). [swissprot;acc:q9hd90]
52	chromodomain helicase dna binding protein 5. [refseq;acc:nm_015557]
53	cyclin-dependent kinase 2-associated protein 1 (cdk2-associated protein 1) (putative oral cancer suppressor) (deleted in oral cancer- 1) (doc-1). [swissprot;acc:o14519]
801	neurogenic differentiation factor 2 (neurod2). [swissprot;acc:q15784]	Subtracted	611.163
802	chromodomain helicase-dna-binding protein 3 (chd-3) (mi-2 autoantigen 240 kda protein) (mi2-alpha). [swissprot;acc:q12873]
803	doc-1 related protein (doc-1r). [swissprot;acc:o75956]
804	neurogenic differentiation factor 6 (neurod6) (my051 protein). [swissprot;acc:q96nk8]
805	neurogenic differentiation factor 1 (neurod1) (neurod). [swissprot;acc:q13562]
806	neurogenic differentiation factor 4 (neurod4). [swissprot;acc:q9hd90]
807	chromodomain helicase dna binding protein 5. [refseq;acc:nm_015557]
808	cyclin-dependent kinase 2-associated protein 1 (cdk2-associated protein 1) (putative oral cancer suppressor) (deleted in oral cancer- 1) (doc-1). [swissprot;acc:o14519]

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.