MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Rank	Gene	description	Value Type	Network Comparison Type	Interaction Map	Filtered	red	green	network_comparison

Results: HTML CSV LaTeX

Showing element 6358 to 6407 of 6456 in total

Value Type  : Measured
Interaction Map  : High confidence
Filtered  : 1

Rank	description	Network Comparison Type	red	green	network_comparison
3179	carcinoma related gene. [refseq;acc:nm_016041]	Subtracted	0	0	0
3180	3-hydroxyacyl-coa dehydrogenase type ii (ec 1.1.1.35) (type ii hadh) (endoplasmic reticulum-associated amyloid beta-peptide binding protein) (short-chain type dehydrogenase/reductase xh98g2). [swissprot;acc:q99714]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3181	fatty aldehyde dehydrogenase (ec 1.2.1.3) (aldehyde dehydrogenase, microsomal) (aldh class 3). [swissprot;acc:p51648]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3182	transcription factor e2-alpha (immunoglobulin enhancer binding factor e12/e47) (transcription factor-3) (tcf-3) (immunoglobulin transcription factor-1) (transcription factor itf-1) (kappa-e2-binding factor). [swissprot;acc:p15923]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3183	core-binding factor, beta subunit (cbf-beta) (polyomavirus enhancer binding protein 2 beta subunit) (pebp2-beta) (pea2-beta) (sl3-3 enhancer factor 1 beta subunit) (sl3/akv core-binding factor beta subunit). [swissprot;acc:q13951]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3184	nuclear autoantigen sp-100 (speckled 100 kda) (nuclear dot-associated sp100 protein) (lysp100b). [swissprot;acc:p23497]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3185	ferrochelatase, mitochondrial precursor (ec 4.99.1.1) (protoheme ferro-lyase) (heme synthetase). [swissprot;acc:p22830]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3186	protein kinase c, theta type (ec 2.7.1.-) (npkc-theta). [swissprot;acc:q04759]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3187	doublesex and mab-3 related transcription factor 3; testis-specific protein; dmrt-like family a3. [refseq;acc:nm_021240]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3188	connective tissue growth factor-like protein precursor (ctgf-l) (wnt1 inducible signaling pathway protein 2) (wisp-2) (connective tissue growth factor-related protein 58). [swissprot;acc:o76076]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3189	ring finger protein 4. [swissprot;acc:p78317]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3190	myotubularin-related protein 1 (ec 3.1.3.-). [swissprot;acc:q13613]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3191	amyloid beta precursor protein-binding protein 2; amyloid beta precursor protein (cytoplasmic tail)-binding protein 2; protein interacting with app tail 1. [refseq;acc:nm_006380]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3192	ubiquitin carboxyl-terminal hydrolase 13 (ec 3.1.2.15) (ubiquitin thiolesterase 13) (ubiquitin-specific processing protease 13) (deubiquitinating enzyme 13) (isopeptidase t-3) (isot-3). [swissprot;acc:q92995]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3193	rab gdp dissociation inhibitor beta (rab gdi beta) (gdi-2). [swissprot;acc:p50395]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3194	muts protein homolog 4. [swissprot;acc:o15457]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3195	integrin beta-3 precursor (platelet membrane glycoprotein iiia) (gpiiia) (cd61 antigen). [swissprot;acc:p05106]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3196	homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein (methyl methanesulfonate (mmf)-inducible fragment protein 1). [swissprot;acc:q15011]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3197	cisplatin resistance related protein crr9p. [refseq;acc:nm_030782]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3198	rp42 homolog; squamous cell carcinoma-related oncogene. [refseq;acc:nm_020640]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3199	complement component c6 precursor. [swissprot;acc:p13671]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3200	endosome-associated fyve-domain protein. [refseq;acc:nm_014733]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3201	recessive polycystic kidney disease protein tg737 homolog. [swissprot;acc:q13099]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3202	ran binding protein 3 isoform ranbp3-d; ran-binding protein-3. [refseq;acc:nm_007322]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3203	high mobility group protein 4 (hmg-4) (high mobility group protein 2a) (hmg-2a). [swissprot;acc:o15347]	Divided	0.00001	0.00001	1
		Subtracted	0	0	0
3204	vaccinia related kinase 2; vaccinia-related kinase-2. [refseq;acc:nm_006296]	Divided	0.00001	0.00001	1

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.