MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values. Interestingly most of the proteins in the first 100 positions in this table would occur in the divided ranks table between position 100 and 200, indicating a difference in emphasis between the two simulations but not in the overall function. The fully annotated table, include Ensembl gene identifiers and network values can be found in the supplementary data.

Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Gene	description	Rank	Value Type	Interaction Map	Filtered	Network Comparison Type	network_comparison	red	green

Results: HTML CSV LaTeX

Showing element 551 to 600 of 16578 in total

Value Type  : Measured
Filtered  : 1

description	Rank	Interaction Map	Network Comparison Type	network_comparison	red	green
60s ribosomal protein l13a (23 kda highly basic protein). [swissprot;acc:p40429]	2449	High confidence	Divided	1.03303	3730.74	3611.45
	2529		Subtracted	119.29
	4771	Low confidence	Divided	1.0125	7684.73	7780.81
	4777		Subtracted	96.08
60s ribosomal protein l14 (cag-isl 7). [swissprot;acc:p50914]	2074	High confidence	Divided	1.05579	3614.91	3423.89
	2392		Subtracted	191.02
	4217	Low confidence	Divided	1.02016	8183.95	8348.94
	4312		Subtracted	164.99
60s ribosomal protein l15. [swissprot;acc:p39030]	2530	High confidence		117.38	4888.72	5006.1
	2532		Divided	1.02401
	3472	Low confidence		1.02615	7801.03	8005.05
	3543		Subtracted	204.02
60s ribosomal protein l17 (l23). [swissprot;acc:p18621]	1894	High confidence	Divided	1.06308	3598.08	3384.59
	2362		Subtracted	213.49
	4719	Low confidence	Divided	1.01373	7511.52	7614.69
	4759		Subtracted	103.17
60s ribosomal protein l18. [swissprot;acc:q07020]	2694	High confidence	Divided	1.00446	4113.79	4095.53
	2734		Subtracted	18.26
	3503	Low confidence	Divided	1.026	7757.29	7958.97
	3586		Subtracted	201.68
60s ribosomal protein l18a. [swissprot;acc:q02543]	806	High confidence	Divided	1.11003	4708.61	5226.71
	1083	Low confidence		1.03727	7735.75	8024.04
	1098	High confidence	Subtracted	518.1	4708.61	5226.71
	1192	Low confidence		288.29	7735.75	8024.04
60s ribosomal protein l19. [swissprot;acc:p14118]	2136	High confidence	Divided	1.05381	3687.49	3499.2
	2401		Subtracted	188.29
	4481	Low confidence	Divided	1.01893	7474.75	7616.28
	4545		Subtracted	141.53
60s ribosomal protein l21. [swissprot;acc:p46778]	343			458.06	8452.93	8910.99
	367		Divided	1.05419
	1510	High confidence		1.07426	5546.11	5957.99
	1663		Subtracted	411.88
60s ribosomal protein l22 (epstein-barr virus small rna associated protein) (eber associated protein) (eap) (heparin binding protein hbp15). [swissprot;acc:p35268]	2662			39.84	7780.98	7741.14
	2673		Divided	1.00515
	3186	Low confidence		1.0273	7800.18	8013.09
	3332		Subtracted	212.91
60s ribosomal protein l23 (l17). [swissprot;acc:p23131]	2115	High confidence	Divided	1.0546	3672.49	3482.34
	2397		Subtracted	190.15
	4239	Low confidence	Divided	1.01991	7562.4	7712.96
	4459		Subtracted	150.56
60s ribosomal protein l23a. [swissprot;acc:p29316]	2175	High confidence	Divided	1.05146	3642.13	3463.88
	2421		Subtracted	178.25
	4610	Low confidence	Divided	1.01653	7434.61	7557.49
	4665		Subtracted	122.88
60s ribosomal protein l24 (l30). [swissprot;acc:p38663]	510	High confidence		824.02	7087.23	7911.25
	727		Divided	1.11627
	2829	Low confidence		1.02894	7874.91	8102.83
	2876		Subtracted	227.92
60s ribosomal protein l26. [swissprot;acc:q02877]	2051	High confidence	Divided	1.05646	3601.97	3409.48
	2388		Subtracted	192.49

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.