Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1051 to 1100 of 6456 in total
Value Type: Measured
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.14285714285714\textwidth} \def\wcB{0.14285714285714\textwidth} \def\wcC{0.14285714285714\textwidth} \def\wcD{0.14285714285714\textwidth} \def\wcE{0.14285714285714\textwidth} \def\wcF{0.14285714285714\textwidth} \begin{longtable}{|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 526\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent aquaporin-cd (aqp-cd) (water channel protein for renal collecting duct) (adh water channel) (aquaporin 2) (collecting duct water channel protein) (wch-cd). [source:swissprot;acc:p41181]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10639.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12117.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13886\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent nuclear rna export factor 1 (tip associating protein) (tip-associated protein) (mrna export factor tap). [source:swissprot;acc:q9ubu9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5207.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6010.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 802.67\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 527\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent protein phosphatase 2c beta isoform (ec 3.1.3.16) (pp2c-beta). [source:swissprot;acc:o75688]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4775.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5438.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13886\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent u6 snrna-associated sm-like protein lsm1 (small nuclear ribonuclear casm) (cancer-associated sm-like). [source:swissprot;acc:o15116]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4700.42\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5492.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 792.21\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 528\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent aquaporin-chip (water channel protein for red blood cells and kidney proximal tubule) (aquaporin 1) (aqp-1) (urine water channel). [source:swissprot;acc:p29972]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10635.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12111.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13879\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial processing peptidase beta subunit, mitochondrial precursor (ec 3.4.24.64) (beta-mpp) (p-52). [source:swissprot;acc:o75439]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5244.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6036.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 791.56\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 529\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial import receptor subunit tom20 homolog (mitochondrial 20 kda outer membrane protein) (outer mitochondrial membrane receptor tom20). [source:swissprot;acc:q15388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8600.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 9792.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13866\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial processing peptidase alpha subunit, mitochondrial precursor (ec 3.4.24.64) (alpha-mpp) (p-55) (ha1523). [source:swissprot;acc:q10713]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5244.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6036.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 791.5\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 530\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent peroxisomal farnesylated protein (33 kda housekeeping protein) (peroxin 19). [source:swissprot;acc:p40855]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8600.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 9792.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13866\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 5246.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6037.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 790.99\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 531\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 5773.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6563.69\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 790.24\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent transcription initiation factor iib (general transcription factor tfiib) (s300-ii). [source:swissprot;acc:q00403]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4651.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5296.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13863\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 532\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent repressor of estrogen receptor activity; b-cell associated protein. [source:refseq;acc:nm\_007273]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5773.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6563.69\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 790.24\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent thyroid receptor interacting protein 3 (trip-3) (fragment). [source:swissprot;acc:q15649]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4651.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 5296.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13863\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 533\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent epoxide hydrolase 1 (ec 3.3.2.3) (microsomal epoxide hydrolase) (epoxide hydratase). [source:swissprot;acc:p07099]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 11785.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10995.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 790.1\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent nhp2-like protein 1 (high mobility group-like nuclear protein 2 homolog 1) ([u4/u6.u5] tri-snrnp 15.5 kda protein) (otk27). [source:swissprot;acc:p55769]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 4651.88\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 5296.78\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.13863\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 534\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent nuclear fragile x mental retardation protein interacting protein 1; nuclear fragile x mental retardation intercating protein 1; nuclear fragile x mental retardation protein-interacting protein 1. [source:refseq;acc:nm\_012345]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent proline synthetase co-transcribed bacterial homolog protein. [source:swissprot;acc:o94903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5233.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6022.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 788.74\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 535\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent translocon-associated protein, delta subunit precursor (trap-delta) (signal sequence receptor delta subunit) (ssr-delta). [source:swissprot;acc:p51571]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10603.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12069.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13826\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent vinculin (metavinculin). [source:swissprot;acc:p18206]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5958.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6743.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 785.14\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 536\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent calsyntenin-1 precursor. [source:swissprot;acc:o94985]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10603.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12069.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13826\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent ferritin heavy chain (ferritin h subunit). [source:swissprot;acc:p02794]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 6227.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7012.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 785.03\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 537\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cellular repressor of e1a-stimulated genes 2. [source:refseq;acc:nm\_153836]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10603.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12069.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13826\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 538\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent dj681n20.2 (novel protein similar to ferritin, light polypeptide (ftl)). [source:sptrembl;acc:q9byw6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent protein-tyrosine phosphatase beta precursor (ec 3.1.3.48) (r-ptp- beta). [source:swissprot;acc:p23467]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10603.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12069.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13825\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 539\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent disks large-associated protein 1 (dap-1) (guanylate kinase-associated protein) (hgkap) (sap90/psd-95-associated protein 1) (sapap1) (psd- 95/sap90 binding protein 1). [source:swissprot;acc:o14490]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent thymus-specific serine protease precursor (ec 3.4.-.-). [source:swissprot;acc:q9nqe7]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 10603.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 12069.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.13825\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 540\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent gk001 protein. [source:refseq;acc:nm\_020198]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent putative adenosylhomocysteinase 2 (ec 3.3.1.1) (s-adenosyl-l- homocysteine hydrolase) (adohcyase). [source:swissprot;acc:o43865]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 541\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent calsyntenin-2 precursor. [source:swissprot;acc:q9h4d0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10600.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12065.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13819\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent limkain b1. [source:refseq;acc:nm\_019081]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 542\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent putative adenosylhomocysteinase 3 (ec 3.3.1.1) (s-adenosyl-l- homocysteine hydrolase) (adohcyase). [source:swissprot;acc:q96hn2]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent rac-alpha serine/threonine kinase (ec 2.7.1.-) (rac-pk-alpha) (protein kinase b) (pkb) (c-akt). [source:swissprot;acc:p31749]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 3889.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4426.74\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.13819\vspace{3pt}}}\\\cline{1-2}\cline{4-5} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 543\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent calsyntenin-3 precursor. [source:swissprot;acc:q9bqt9]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 10599.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12064.7\vspace{3pt}}&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent cellular repressor of e1a-stimulated genes. [source:refseq;acc:nm\_003851]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}}\\\cline{1-2} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 544\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent disks large-associated protein 3 (dap-3) (sap90/psd-95-associated protein 3) (sapap3) (psd-95/sap90 binding protein 3) (fragment). [source:swissprot;acc:o95886]\vspace{3pt}}&&&&\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent rac-gamma serine/threonine protein kinase (ec 2.7.1.-) (rac-pk-gamma) (protein kinase akt-3) (protein kinase b, gamma) (pkb gamma) (stk-2). [source:swissprot;acc:q9y243]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3889.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4426.74\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13819\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 545\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent kininogen precursor (alpha-2-thiol proteinase inhibitor) [contains: bradykinin]. [source:swissprot;acc:p01042]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent rac-beta serine/threonine protein kinase (ec 2.7.1.-) (rac-pk-beta) (protein kinase akt-2) (protein kinase b, beta) (pkb beta). [source:swissprot;acc:p31751]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3889.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4426.74\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13819\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 546\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent disks large-associated protein 2 (dap-2) (sap90/psd-95-associated protein 2) (sapap2) (psd-95/sap90 binding protein 2) (fragment). [source:swissprot;acc:q9p1a6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent zinc finger protein t86. [source:swissprot;acc:o00488]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4052.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4612.54\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13812\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 547\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent ferritin light chain (ferritin l subunit). [source:swissprot;acc:p02792]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent werner helicase interacting protein isoform 1; putative helicase ruvbl; werner helicase interacting protein. [source:refseq;acc:nm\_020135]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 5291.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6020.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13762\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 548\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent adrenodoxin, mitochondrial precursor (adrenal ferredoxin) (hepatoredoxin) (ferredoxin 1). [source:swissprot;acc:p10109]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 8268.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 9405.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13759\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent disks large-associated protein 4 (dap-4) (sap90/psd-95-associated protein 4) (sapap4) (psd-95/sap90 binding protein 4). [source:swissprot;acc:q9y2h0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.8\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 549\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5865.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6671.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13731\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial ferritin; ferritin heavy chain-like; ferritin h subunit. [source:refseq;acc:nm\_177478]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 6228.42\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.79\vspace{3pt}}\\\cline{1-2}\cline{4-6} \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 550\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent ferritin heavy polypeptide-like 17. [source:swissprot;acc:q9bxu8]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6228.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 7013.53\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 784.56\vspace{3pt}}\\\cline{2-6} &\parbox{\wcB}{\vspace{3pt}\noindent prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5773.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6563.69\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.13687\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/