Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1 to 50 of 3228 in total
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.14285714285714\textwidth} \def\wcB{0.14285714285714\textwidth} \def\wcC{0.14285714285714\textwidth} \def\wcD{0.14285714285714\textwidth} \def\wcE{0.14285714285714\textwidth} \def\wcF{0.14285714285714\textwidth} \begin{longtable}{|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent UBAC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 2.4\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 15\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 28\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.86667\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 3\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PSCD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 4\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PSCD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 5\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PSCD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 6\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PSCD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 7\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent HLX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 215\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 322\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.49767\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 8\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent HBS1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 9\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent XAB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 212\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 309\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.45755\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 10\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ATPBD1C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 11\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent RINT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 337\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 232\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.45259\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 12\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent RHOBTB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 13\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent UFC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent protein cgi-126 (protein hspc155). [source:swissprot;acc:q9y3c8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 288.754\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 212.554\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.3585\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 14\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ATG4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [source:refseq;acc:nm\_052936]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 56.6768\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 75.3531\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.32952\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 15\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent MAP1LC3B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent microtubule-associated proteins 1a/1b light chain 3b (map1a/map1b lc3 b) (map1a/1b light chain 3 b). [source:swissprot;acc:q9gzq8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 56.7244\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 75.3948\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.32914\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 16\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent MAP1LC3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent microtubule-associated proteins 1a/1b light chain 3a (map1a/map1b lc3 a) (map1a/1b light chain 3 a). [source:swissprot;acc:q9h492]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 56.7252\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 75.3954\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.32913\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 17\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ATG4B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 56.7841\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 75.447\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.32866\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 18\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GBE1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [source:swissprot;acc:q04446]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 185.678\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 245.247\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.32082\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 19\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PYGB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glycogen phosphorylase, brain form (ec 2.4.1.1). [source:swissprot;acc:p11216]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 20\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PYGL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glycogen phosphorylase, liver form (ec 2.4.1.1). [source:swissprot;acc:p06737]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 21\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent MYO15A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent myosin xv (unconventional myosin-15). [source:swissprot;acc:q9ukn7]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 22\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PYGM\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent glycogen phosphorylase, muscle form (ec 2.4.1.1) (myophosphorylase). [source:swissprot;acc:p11217]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 23\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent MRPS17\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 58\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 44\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.31818\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 24\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PANK1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 25\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PANK2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 26\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PANK3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 27\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent SLC25A43\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 28\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ATF3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent cyclic-amp-dependent transcription factor atf-3 (activating transcription factor 3). [source:swissprot;acc:p18847]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 201.949\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 153.671\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.31416\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 29\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PPP2R2D\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent uncharacterized hematopoietic stem/progenitor cells protein mds026. [source:sptrembl;acc:q9nz48]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 187.458\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 243.678\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.29991\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 30\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, alpha isoform (pp2a, subunit b, b-alpha isoform) (pp2a, subunit b, b55-alpha isoform) (pp2a, subunit b, pr55-alpha isoform) (pp2a, subunit b, r2-alpha isoform). [source:swissprot;acc:q00007]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 187.457\vspace{3pt}}&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 31\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PPP2R2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, beta isoform (pp2a, subunit b, b-beta isoform) (pp2a, subunit b, b55- beta isoform) (pp2a, subunit b, pr55-beta isoform) (pp2a, subunit b, r2-beta isoform). [source:swissprot;acc:q00005]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 187.458\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 243.677\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.2999\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 32\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PPP2R2C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, gamma isoform (pp2a, subunit b, b-gamma isoform) (pp2a, subunit b, b55-gamma isoform) (pp2a, subunit b, pr55-gamma isoform) (pp2a, subunit b, r2-gamma isoform) (imypno1). [source:swissprot;acc:q9y2t4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 187.462\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 243.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.29985\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 33\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PPP2R1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, beta isoform (pp2a, subunit a, pr65-beta isoform) (pp2a, subunit a, r1-beta isoform). [source:swissprot;acc:p30154]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 188.688\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 242.742\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.28647\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 34\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PPP2R1A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, alpha isoform (pp2a, subunit a, pr65-alpha isoform) (pp2a, subunit a, r1-alpha isoform) (medium tumor antigen-associated 61 kda protein). [source:swissprot;acc:p30153]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 189.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 242.453\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.28235\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 35\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent NFYC\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent nuclear transcription factor y subunit gamma (nf-y protein chain c) (nuclear factor yc) (nf-yc) (ccaat-binding transcription factor subunit c) (cbf-c) (transactivator hsm-1/2). [source:swissprot;acc:q13952]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 260.532\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 204.309\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.27519\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 36\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent NFYA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent ccaat-binding transcription factor subunit b (cbf-b) (nf-y protein chain a) (nf-ya) (caat-box dna binding protein subunit a). [source:swissprot;acc:p23511]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 37\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PPP1R14A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 322\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 253\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.27273\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 38\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent MFAP4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 39\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent PPP1R14D\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 40\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent FCN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [source:swissprot;acc:q15485]\vspace{3pt}}&&&\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 41\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [source:refseq;acc:nm\_030949]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 42\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent FOS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent proto-oncogene protein c-fos (cellular oncogene fos) (g0/g1 switch regulatory protein 7). [source:swissprot;acc:p01100]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 204.641\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 160.957\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.2714\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 43\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent \vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent jun dimerization protein. [source:refseq;acc:nm\_130469]\vspace{3pt}}&&&\\\cline{1-3}\cline{5-6} \parbox{\wcA}{\vspace{3pt}\noindent 44\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent FOSL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent fos-related antigen 2. [source:swissprot;acc:p15408]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 161.046\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.2707\vspace{3pt}}\\\cline{1-3}\cline{5-6} \parbox{\wcA}{\vspace{3pt}\noindent 45\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent FOSB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent protein fosb (g0/g1 switch regulatory protein 3). [source:swissprot;acc:p53539]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 161.051\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.27066\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 46\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent FOSL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent fos-related antigen 1 (fra-1). [source:swissprot;acc:p15407]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 204.642\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 161.068\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.27053\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 47\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent TMEM132A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent gbp protein isoform a. [source:refseq;acc:nm\_017870]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 325.586\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 256.492\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.26938\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 48\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent GABARAP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent gaba(a) receptor-associated protein; gaba(a)-receptor-associated protein. [source:refseq;acc:nm\_007278]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 65.4586\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 83.0461\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.26868\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 49\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ARRB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent beta-arrestin 2 (arrestin, beta 2). [source:swissprot;acc:p32121]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 133\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 105\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1.26667\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 50\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ARRB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent beta-arrestin 1 (arrestin, beta 1). [source:swissprot;acc:p49407]\vspace{3pt}}&&&\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Hugo is the HGNC identifier if it exists
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/