Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Value Type Network Comparison Type description Filtered Interaction Map green red network_comparison
Results: HTML CSV LaTeX Showing element 51 to 100 of 12912 in total 
Network Comparison Type: Divided
Filtered: 1
Interaction Map: High confidence

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
13\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 3. [source:refseq;acc:nm\_014912]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
14\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ras gtpase-activating protein ngap (ras protein activator like 1). [source:swissprot;acc:q9ujf2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [source:refseq;acc:nm\_052936]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
75.3531\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.6768\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32952\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
ras gtpase-activating protein ngap (ras protein activator like 1). [source:swissprot;acc:q9ujf2]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
15\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
871\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2671\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.06659\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
microtubule-associated proteins 1a/1b light chain 3b (map1a/map1b lc3 b) (map1a/1b light chain 3 b). [source:swissprot;acc:q9gzq8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
75.3948\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.7244\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32914\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
179.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1688.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9.40399\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gbp protein isoform a. [source:refseq;acc:nm\_017870]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
42.4773\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23.9771\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.77158\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
16\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
871\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2671\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.06659\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
microtubule-associated proteins 1a/1b light chain 3a (map1a/map1b lc3 a) (map1a/1b light chain 3 a). [source:swissprot;acc:q9h492]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
75.3954\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.7252\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32913\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
179.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1688.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9.40399\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29.5127\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
51.6817\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.75117\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
17\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dgcr14 protein (digeorge syndrome critical region 14) (es2 protein). [source:swissprot;acc:q96df8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1365\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
460\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.96739\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
75.447\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.7841\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32866\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dgcr14 protein (digeorge syndrome critical region 14) (es2 protein). [source:swissprot;acc:q96df8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
441\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.0828\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.80542\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29.5127\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
51.6817\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.75117\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
18\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1865.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
677.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.75351\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [source:swissprot;acc:q04446]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
245.247\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
185.678\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
823.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
108.641\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7.58176\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dgcr14 protein (digeorge syndrome critical region 14) (es2 protein). [source:swissprot;acc:q96df8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
36.9459\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21.4476\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.72261\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
19\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1865.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
677.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.75351\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycogen phosphorylase, brain form (ec 2.4.1.1). [source:swissprot;acc:p11216]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
245.247\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
185.678\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
823.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
108.641\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7.58176\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein kinase, interferon-inducible double stranded rna dependent activator; protein activator of the interferon-induced protein kinase. [source:refseq;acc:nm\_003690]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
43.561\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25.6987\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.69507\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
20\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1865.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
677.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.75351\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycogen phosphorylase, liver form (ec 2.4.1.1). [source:swissprot;acc:p06737]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
245.247\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
185.678\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
823.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
108.641\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7.58176\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-7 subunit. [source:swissprot;acc:o60262]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24.2744\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.3337\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.66157\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
21\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [source:swissprot;acc:q15485]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1865.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
677.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.75351\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin xv (unconventional myosin-15). [source:swissprot;acc:q9ukn7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
245.247\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
185.678\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [source:swissprot;acc:q15485]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
823.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
108.641\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7.58176\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-12 subunit. [source:swissprot;acc:q9ubi6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24.2744\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.3337\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.66157\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
22\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [source:refseq;acc:nm\_030949]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1865.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
677.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.75351\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycogen phosphorylase, muscle form (ec 2.4.1.1) (myophosphorylase). [source:swissprot;acc:p11217]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
245.247\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
185.678\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [source:refseq;acc:nm\_030949]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
823.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
108.641\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7.58176\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-4 subunit. [source:swissprot;acc:p50150]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24.2915\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.3357\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.66049\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
23\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gbp protein isoform a. [source:refseq;acc:nm\_017870]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1894.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
699.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.7072\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.31818\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neurogenic differentiation factor 2 (neurod2). [source:swissprot;acc:q15784]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
457.521\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
143.692\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.18404\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-3 subunit. [source:swissprot;acc:p29798]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24.2919\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.3358\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.66046\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
24\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein kinase, interferon-inducible double stranded rna dependent activator; protein activator of the interferon-induced protein kinase. [source:refseq;acc:nm\_003690]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2108.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
950.561\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.21818\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.31818\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
chromodomain helicase-dna-binding protein 3 (chd-3) (mi-2 autoantigen 240 kda protein) (mi2-alpha). [source:swissprot;acc:q12873]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
457.521\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
143.692\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.18404\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-8 subunit (gamma-9). [source:swissprot;acc:q9uk08]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24.2941\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.336\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.66032\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
25\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-7 subunit. [source:swissprot;acc:o60262]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
892.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1833.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.0534\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.31818\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
doc-1 related protein (doc-1r). [source:swissprot;acc:o75956]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
457.521\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
143.692\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.18404\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-5 subunit. [source:swissprot;acc:p30670]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24.295\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.3361\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.66026\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/