Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type Rank Gene description Interaction Map Network Comparison Type red Filtered green network_comparison
Results: HTML CSV LaTeX Showing element 51 to 100 of 77072 in total 
Value Type: Measured

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{6}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
oxysterol binding protein-related protein 7 (osbp-related protein 7) (orp-7). [source:swissprot;acc:q9bzf2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
736.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2113.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.86965\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
43\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4300000\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
sphingomyelin phosphodiesterase 2 (ec 3.1.4.12) (neutral sphingomyelinase) (nsmase) (n-smase) (lyso-platelet activating factor- phospholipase c) (lyso-paf-plc). [source:swissprot;acc:o60906]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
tbc1 domain family, member 8 (with gram domain); vascular rab-gap/tbc-containing. [source:refseq;acc:nm\_007063]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
2.31962\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
231962\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
vitelliform macular dystrophy 2-like protein 1. [source:refseq;acc:nm\_017682]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
36360.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
43368.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7008.5\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 277. [source:swissprot;acc:q9nrm2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
13174.7\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
15605.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2430.4\vspace{3pt}}\\\cline{1-5}\cline{7-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
8\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
85\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
6410\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.4118\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
deoxyribonuclease ii beta isoform 1 precursor; deoxyribonuclease ii beta; endonuclease dlad. [source:refseq;acc:nm\_021233]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
33111.4\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
39358.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6246.7\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleoporin nup43 (p42). [source:swissprot;acc:q8nfh3]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
5106.93\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7500.75\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2393.82\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol-glycan biosynthesis, class f protein (pig-f). [source:swissprot;acc:q07326]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
3278\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
5058.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.54317\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
43\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4300000\vspace{3pt}}\\\cline{2-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 277. [source:swissprot;acc:q9nrm2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
7537.89\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
8770.72\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1232.83\vspace{3pt}}\\\cline{1-3}\cline{5-5}\cline{7-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
ataxin 2; olivopontocerebellar ataxia 2, autosomal dominant. [source:refseq;acc:nm\_002973]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
12478\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
14756\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2278\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
10255.7\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
11468.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1212.6\vspace{3pt}}\\\cline{2-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
85\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
6410\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.4118\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
n33 protein. [source:swissprot;acc:q13454]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
3278\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
5058.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.54317\vspace{3pt}}\\\cline{2-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
21185\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
sperm associated antigen 7. [source:refseq;acc:nm\_004890]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
23318\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
19280.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4037.2\vspace{3pt}}\\\cline{2-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
tob2 protein (transducer of erbb-2 2). [source:swissprot;acc:q14106]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitously transcribed y chromosome tetratricopeptide repeat protein (ubiquitously transcribed tpr protein on the y chromosome). [source:swissprot;acc:o14607]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
383.762\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.6048\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
36.1876\vspace{3pt}}\\\cline{1-2}\cline{4-5}\cline{7-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
10\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj570f3.6 (novel protein similar to lysophospholipase ii (lypla2)). [source:sptrembl;acc:q9uge0]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1593\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
2804\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1211\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
implantation-associated protein. [source:refseq;acc:nm\_032121]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
3278\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5058.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.54317\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
85\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
6410\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.4118\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin va (myosin 5a) (dilute myosin heavy chain, non-muscle) (myosin heavy chain 12) (myoxin). [source:swissprot;acc:q9y4i1]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
7830.62\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
6193.07\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1637.55\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
19498.1\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
17265.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2232.7\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
199.549\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.56738\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
35.8425\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
tob1 protein (transducer of erbb-2 1). [source:swissprot;acc:p50616]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{1-2}\cline{4-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
11\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [source:refseq;acc:nm\_052936]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
5734.28\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
7252.02\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1517.74\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4230.36\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
5341.81\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1111.45\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
dab2 interacting protein; ngap-like protein; doc-2/dab2 interactive protein. [source:refseq;acc:nm\_032552]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
199.249\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.71669\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
34.8539\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinoblastoma-associated factor 600. [source:refseq;acc:nm\_020765]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
7256.71\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
9368.87\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2112.16\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
199.549\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.56738\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
35.8425\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
thyroid receptor interacting protein 8 (trip-8) (fragment). [source:swissprot;acc:q15652]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1917.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2950.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.53861\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
12\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5629.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7099.51\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1469.89\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 4. [source:refseq;acc:nm\_030627]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
gbp protein isoform a. [source:refseq;acc:nm\_017870]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1921.96\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
2954.24\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.5371\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15464.1\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
17572.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2108.6\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
199.249\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.71669\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
34.8539\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
859\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
58\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
14.8103\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
34190.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
40795.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6604.9\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription initiation factor tfiid 135 kda subunit (tafii-135) (tafii135) (tafii-130) (tafii130). [source:swissprot;acc:o00268]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
31122\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
30022.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1099.6\vspace{3pt}}\\\cline{1-5}\cline{7-8}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
13\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
adp-ribosylation factor gtpase-activating protein 3 (arf gap 3). [source:swissprot;acc:q9np61]\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1363\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
47\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
29\vspace{3pt}}\\\cline{4-4}\cline{8-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&&\parbox{\wcH}{\vspace{3pt}\noindent
1316\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 3. [source:refseq;acc:nm\_014912]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
fk506-binding protein 6 (ec 5.2.1.8) (peptidyl-prolyl cis-trans isomerase) (ppiase) (rotamase) (36 kda fk506 binding protein) (fkbp- 36) (immunophilin fkbp36). [source:swissprot;acc:o75344]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
8.11997\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
115.385\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
14.21\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/