Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Value Type Network Comparison Type description Interaction Map Filtered green red network_comparison
Results: HTML CSV LaTeX
Showing element 1 to 50 of 12912 in total
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.4\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
3\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
5\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
6\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sphingomyelin phosphodiesterase 2 (ec 3.1.4.12) (neutral sphingomyelinase) (nsmase) (n-smase) (lyso-platelet activating factor- phospholipase c) (lyso-paf-plc). [source:swissprot;acc:o60906]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
sphingomyelin phosphodiesterase 2 (ec 3.1.4.12) (neutral sphingomyelinase) (nsmase) (n-smase) (lyso-platelet activating factor- phospholipase c) (lyso-paf-plc). [source:swissprot;acc:o60906]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
8\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
9\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tob2 protein (transducer of erbb-2 2). [source:swissprot;acc:q14106]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45755\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
tob2 protein (transducer of erbb-2 2). [source:swissprot;acc:q14106]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
10\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tob1 protein (transducer of erbb-2 1). [source:swissprot;acc:p50616]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45755\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
tob1 protein (transducer of erbb-2 1). [source:swissprot;acc:p50616]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
11\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dab2 interacting protein; ngap-like protein; doc-2/dab2 interactive protein. [source:refseq;acc:nm\_032552]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45259\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
dab2 interacting protein; ngap-like protein; doc-2/dab2 interactive protein. [source:refseq;acc:nm\_032552]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
12\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 4. [source:refseq;acc:nm\_030627]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.45259\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 4. [source:refseq;acc:nm\_030627]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{2-2}\cline{4-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
13\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 3. [source:refseq;acc:nm\_014912]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein cgi-126 (protein hspc155). [source:swissprot;acc:q9y3c8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.554\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
288.754\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.3585\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/