Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1880 to 1929 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1880\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent d(4) dopamine receptor (d(2c) dopamine receptor). [source:swissprot;acc:p21917]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6076.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6463.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0636\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1881\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 9-4; keratin associated protein 9.4. [source:refseq;acc:nm\_033191]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6076.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6462.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0635\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1882\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent eukaryotic translation initiation factor 2 subunit 3 (eukaryotic translation initiation factor 2 gamma subunit) (eif-2-gamma). [source:swissprot;acc:p41091]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5490.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5838.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06346\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1883\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 1 (26s proteasome regulatory subunit s1) (26s proteasome subunit p112). [source:swissprot;acc:q99460]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5826\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6195.48\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06342\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1884\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adhesion regulating molecule 1 precursor (110 kda cell membrane glycoprotein) (gp110). [source:swissprot;acc:q16186]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1885\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin carboxyl-terminal hydrolase isozyme l5 (ec 3.4.19.12) (uch- l5) (ubiquitin thiolesterase l5) (ubiquitin c-terminal hydrolase uch37) (cgi-70) (ad-019). [source:swissprot;acc:q9y5k5]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1886\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rna polymerase ii subunit 5-mediating protein (rpb5-mediating protein). [source:swissprot;acc:o94763]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1887\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent protein regulator of cytokinesis 1; protein regulating cytokinesis 1. [source:refseq;acc:nm\_003981]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5438.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5783.11\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06335\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1888\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bromodomain-containing protein 4 (hunk1 protein). [source:swissprot;acc:o60885]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1889\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent testis-specific bromodomain protein. [source:refseq;acc:nm\_001726]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5438.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5783.2\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1890\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nag14 protein. [source:refseq;acc:nm\_022143]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5438.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5783.11\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1891\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bromodomain-containing protein 3 (ring3-like protein). [source:swissprot;acc:q15059]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5438.18\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5782.62\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06334\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1892\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bromodomain-containing protein 2 (ring3 protein) (o27.1.1). [source:swissprot;acc:p25440]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5438.52\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5783.01\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1893\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent acid ceramidase precursor (ec 3.5.1.23) (acylsphingosine deacylase) (n-acylsphingosine amidohydrolase) (ac) (putative 32 kda heart protein) (php32). [source:swissprot;acc:q13510]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6830.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7261.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06319\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1894\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l17 (l23). [source:swissprot;acc:p18621]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3598.08\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3384.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06308\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1895\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ruvb-like 1 (ec 3.6.1.-) (49-kda tata box-binding protein-interacting protein) (49 kda tbp-interacting protein) (tip49a) (pontin 52) (nuclear matrix protein 238) (nmp 238) (54 kda erythrocyte cytosolic protein) (ecp-54) (tip60-associated protein 54-alpha) (tap54-alpha). [source:swissprot;acc:q9y265]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5882.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6252.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.063\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1896\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent m-phase inducer phosphatase 1 (ec 3.1.3.48) (dual specificity phosphatase cdc25a). [source:swissprot;acc:p30304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4521\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4805.16\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06285\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1897\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent thioredoxin-like; pkc-interacting cousin of thioredoxin. [source:refseq;acc:nm\_006541]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4590.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4879.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06282\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1898\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6885.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7317.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0628\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1899\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ruvb-like 2 (ec 3.6.1.-) (48-kda tata box-binding protein-interacting protein) (48-kda tbp-interacting protein) (tip49b) (repressing pontin 52) (reptin 52) (51 kda erythrocyte cytosolic protein) (ecp-51) (tip60-associated protein 54-beta) (tap54-beta) (cgi-46). [source:swissprot;acc:q9y230]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5786.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6149.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06269\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1900\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent seven in absentia homolog 2. [source:refseq;acc:nm\_005067]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5399.47\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5737.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06266\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1901\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent inorganic pyrophosphatase (ec 3.6.1.1) (pyrophosphate phospho- hydrolase) (ppase). [source:swissprot;acc:q15181]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5204.25\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5530.11\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06261\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1902\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent inorganic pyrophosphatase 2 isoform 1. [source:refseq;acc:nm\_176869]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1903\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent aryl-hydrocarbon interacting protein-like 1. [source:swissprot;acc:q9nzn9]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1904\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ah receptor-interacting protein (aip) (immunophilin homolog ara9) (hbv-x associated protein 2). [source:swissprot;acc:o00170]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1905\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent son of sevenless protein homolog 2 (sos-2). [source:swissprot;acc:q07890]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7497.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7967.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06257\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1906\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial ribosomal protein l18. [source:refseq;acc:nm\_014161]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5396.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5733.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06251\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1907\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hepatitis c virus core-binding protein 6; cervical cancer oncogene 3. [source:refseq;acc:nm\_023934]\vspace{3pt}}&\multirow{11}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6858.84\vspace{3pt}}}&\multirow{11}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7287.27\vspace{3pt}}}&\multirow{11}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06246\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1908\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dc11 protein. [source:refseq;acc:nm\_020186]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1909\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent amyloid beta precursor protein-binding protein 1; amyloid protein-binding protein 1. [source:refseq;acc:nm\_003905]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1910\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 5-aminolevulinic acid synthase, erythroid-specific, mitochondrial precursor (ec 2.3.1.37) (delta-aminolevulinate synthase) (delta-ala synthetase) (alas-e). [source:swissprot;acc:p22557]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1911\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin-activating enzyme e1c (uba3 homolog, yeast); ubiquitin-activating enzyme e1c (homologous to yeast uba3). [source:refseq;acc:nm\_003968]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1912\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin-activating enzyme e1 (a1s9 protein). [source:swissprot;acc:p22314]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1913\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent calcium-binding mitochondrial carrier protein aralar1 (solute carrier family 25, member 12). [source:swissprot;acc:o75746]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1914\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent melanoma antigen recognized by t cells 2. [source:refseq;acc:nm\_018194]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1915\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 5-aminolevulinic acid synthase, nonspecific, mitochondrial precursor (ec 2.3.1.37) (delta-aminolevulinate synthase) (delta-ala synthetase) (alas-h). [source:swissprot;acc:p13196]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1916\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent calcium-binding mitochondrial carrier protein aralar2 (solute carrier family 25, member 13) (citrin). [source:swissprot;acc:q9ujs0]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1917\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent acyl carrier protein, mitochondrial precursor (acp) (nadh-ubiquinone oxidoreductase 9.6 kda subunit) (ci-sdap). [source:swissprot;acc:o14561]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1918\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent seven in absentia homolog 1. [source:refseq;acc:nm\_003031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5394.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5730.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06238\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1919\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hydroxyindole o-methyltransferase (ec 2.1.1.4) (hiomt) (acetylserotonin o-methyltransferase) (asmt). [source:swissprot;acc:p46597]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5444.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5783.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06233\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1920\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent basic proline-rich peptide p-e (ib-9). [source:swissprot;acc:p02811]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6262.66\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6652.85\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0623\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1921\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent salivary proline-rich protein po (allele k) [contains: peptide p-d] (fragment). [source:swissprot;acc:p10162]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1922\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hsp90 co-chaperone cdc37 (hsp90 chaperone protein kinase-targeting subunit) (p50cdc37). [source:swissprot;acc:q16543]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5567.41\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5914.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06226\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1923\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent brain protein 16. [source:refseq;acc:nm\_016458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5774.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6133.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06217\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1924\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcriptional adaptor 3-like isoform a. [source:refseq;acc:nm\_006354]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 7260.23\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 7711.3\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06213\vspace{3pt}}}\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1925\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bromodomain containing 7; bromodomain protein; bromodomain-containing 7. [source:refseq;acc:nm\_013263]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 7711.29\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1926\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent frg1 protein (fshd region gene 1 protein). [source:swissprot;acc:q14331]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7711.3\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1927\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcriptional adapter 2-like (ada2-like protein) (kl04p). [source:swissprot;acc:o75478]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1928\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent son of sevenless protein homolog 1 (sos-1). [source:swissprot;acc:q07889]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7514.8\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7980.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06193\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1929\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pxr2b protein. [source:refseq;acc:nm\_016559]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6996.51\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7429.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06184\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/