Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 263 to 312 of 25824 in total
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.125\textwidth} \def\wcB{0.125\textwidth} \def\wcC{0.125\textwidth} \def\wcD{0.125\textwidth} \def\wcE{0.125\textwidth} \def\wcF{0.125\textwidth} \def\wcG{0.125\textwidth} \begin{longtable}{|c|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 33\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, beta isoform (pp2a, subunit a, pr65-beta isoform) (pp2a, subunit a, r1-beta isoform). [source:swissprot;acc:p30154]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 188.688\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 242.742\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.28647\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent spermatogenesis associated 6. [source:refseq;acc:nm\_019073]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 9924.76\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 25146.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 2.53372\vspace{3pt}}}\\\cline{1-2} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 34\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent amp deaminase 2 (ec 3.5.4.6) (amp deaminase isoform l). [source:swissprot;acc:q01433]\vspace{3pt}}&&&&&\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent gaba-a receptor-associated protein. [source:sptrembl;acc:q9by60]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 140.508\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 122.878\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 17.63\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(k), alpha subunit (g(i) alpha-3). [source:swissprot;acc:p08754]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 267.144\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 336.073\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 68.929\vspace{3pt}}\\\cline{2-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(y), alpha subunit (alpha-11). [source:swissprot;acc:p29992]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1836.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 907.546\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2.02382\vspace{3pt}}\\\cline{3-3}\cline{5-7} &&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 40.2812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 24.3678\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.65305\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 8 (mage-8 antigen). [source:swissprot;acc:p43361]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 85915\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, alpha isoform (pp2a, subunit a, pr65-alpha isoform) (pp2a, subunit a, r1-alpha isoform) (medium tumor antigen-associated 61 kda protein). [source:swissprot;acc:p30153]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 189.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 242.453\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.28235\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 35\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.80879\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent apg3p; pc3-96 protein. [source:refseq;acc:nm\_022488]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 140.508\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 122.878\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 17.63\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein beta subunit 5 (transducin beta chain 5). [source:swissprot;acc:o14775]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 267.636\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 335.359\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 67.723\vspace{3pt}}\\\cline{2-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(q), alpha subunit. [source:swissprot;acc:p50148]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1836.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 907.564\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2.02378\vspace{3pt}}\\\cline{3-3}\cline{5-7} &&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 40.2812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 24.3679\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.65304\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [source:swissprot;acc:o60732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 85915\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent nuclear transcription factor y subunit gamma (nf-y protein chain c) (nuclear factor yc) (nf-yc) (ccaat-binding transcription factor subunit c) (cbf-c) (transactivator hsm-1/2). [source:swissprot;acc:q13952]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 260.532\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 204.309\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 1.27519\vspace{3pt}}}\\\cline{1-2} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 36\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent ccaat-binding transcription factor subunit b (cbf-b) (nf-y protein chain a) (nf-ya) (caat-box dna binding protein subunit a). [source:swissprot;acc:p23511]\vspace{3pt}}&&&&&\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent cleavage and polyadenylation specific factor 4, 30kd subunit; cleavage-polyadenylation specificity factor, 30kd; no arches-like (zebrafish) zinc finger protein; cleavage-polyadenylation specificity factor. [source:refseq;acc:nm\_006693]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 227160\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 146079\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 81081\vspace{3pt}}\\\cline{2-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(z), alpha subunit (g(x) alpha chain) (gz-alpha). [source:swissprot;acc:p19086]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 907.741\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2.02344\vspace{3pt}}\\\cline{3-3}\cline{5-7} &&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 40.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 24.369\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.65294\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [source:swissprot;acc:p43365]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 5430.7\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.80879\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent protein kinase, interferon-inducible double stranded rna dependent activator; protein activator of the interferon-induced protein kinase. [source:refseq;acc:nm\_003690]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 320.927\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 254.434\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 66.493\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 17.1626\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 37\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 1 (transducin beta chain 1). [source:swissprot;acc:p04901]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 266.716\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 333.165\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 66.449\vspace{3pt}}\\\cline{2-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(t), alpha-1 subunit (transducin alpha-1 chain). [source:swissprot;acc:p11488]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 907.763\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2.02339\vspace{3pt}}\\\cline{3-3}\cline{5-7} &&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 40.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 24.3691\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.65293\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [source:swissprot;acc:p43355]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 17.1626\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.80879\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 253\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27273\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent trs85 homolog. [source:swissprot;acc:q9y2l5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 227160\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 146079\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 81081\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 38\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein beta subunit 4 (transducin beta chain 4). [source:swissprot;acc:q9hav0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 266.933\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 333.281\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 66.348\vspace{3pt}}\\\cline{2-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(t), alpha-2 subunit (transducin alpha-2 chain). [source:swissprot;acc:p19087]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 907.774\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2.02337\vspace{3pt}}\\\cline{3-3}\cline{5-7} &&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 40.2804\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 24.3692\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.65292\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen 10 (mage-10 antigen). [source:swissprot;acc:p43363]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 5430.7\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 253\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27273\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.80879\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 17.1626\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent wd-repeat protein wdc146. [source:swissprot;acc:q9c0j8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 226186\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 145568\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 80618\vspace{3pt}}}\\\cline{1-2} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 39\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cleavage and polyadenylation specificity factor, 160 kda subunit (cpsf 160 kda subunit). [source:swissprot;acc:q10570]\vspace{3pt}}&&&&&\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [source:swissprot;acc:q15485]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 17.1626\vspace{3pt}}\\\cline{2-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(i), alpha-2 subunit (adenylate cyclase-inhibiting g alpha protein). [source:swissprot;acc:p04899]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 1836.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 907.903\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2.02312\vspace{3pt}}\\\cline{3-3}\cline{5-7} &&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 40.28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 24.37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.65285\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 3 (transducin beta chain 3). [source:swissprot;acc:p16520]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 268.565\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 334.483\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 65.918\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [source:swissprot;acc:p43366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 5430.7\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.80879\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 253\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.27273\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/