Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 263 to 312 of 25824 in total
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
33\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, beta isoform (pp2a, subunit a, pr65-beta isoform) (pp2a, subunit a, r1-beta isoform). [source:swissprot;acc:p30154]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
188.688\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.742\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.28647\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
spermatogenesis associated 6. [source:refseq;acc:nm\_019073]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
9924.76\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
25146.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
2.53372\vspace{3pt}}}\\\cline{1-2}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
34\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
amp deaminase 2 (ec 3.5.4.6) (amp deaminase isoform l). [source:swissprot;acc:q01433]\vspace{3pt}}&&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
gaba-a receptor-associated protein. [source:sptrembl;acc:q9by60]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
140.508\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
122.878\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17.63\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(k), alpha subunit (g(i) alpha-3). [source:swissprot;acc:p08754]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
267.144\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
336.073\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
68.929\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(y), alpha subunit (alpha-11). [source:swissprot;acc:p29992]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.546\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.02382\vspace{3pt}}\\\cline{3-3}\cline{5-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.2812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.3678\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.65305\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 8 (mage-8 antigen). [source:swissprot;acc:p43361]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
85915\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, alpha isoform (pp2a, subunit a, pr65-alpha isoform) (pp2a, subunit a, r1-alpha isoform) (medium tumor antigen-associated 61 kda protein). [source:swissprot;acc:p30153]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
189.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.453\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.28235\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
35\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
apg3p; pc3-96 protein. [source:refseq;acc:nm\_022488]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
140.508\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
122.878\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17.63\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit 5 (transducin beta chain 5). [source:swissprot;acc:o14775]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
267.636\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
335.359\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
67.723\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(q), alpha subunit. [source:swissprot;acc:p50148]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.564\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.02378\vspace{3pt}}\\\cline{3-3}\cline{5-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.2812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.3679\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.65304\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [source:swissprot;acc:o60732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
85915\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear transcription factor y subunit gamma (nf-y protein chain c) (nuclear factor yc) (nf-yc) (ccaat-binding transcription factor subunit c) (cbf-c) (transactivator hsm-1/2). [source:swissprot;acc:q13952]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
260.532\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
204.309\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1.27519\vspace{3pt}}}\\\cline{1-2}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
36\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat-binding transcription factor subunit b (cbf-b) (nf-y protein chain a) (nf-ya) (caat-box dna binding protein subunit a). [source:swissprot;acc:p23511]\vspace{3pt}}&&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cleavage and polyadenylation specific factor 4, 30kd subunit; cleavage-polyadenylation specificity factor, 30kd; no arches-like (zebrafish) zinc finger protein; cleavage-polyadenylation specificity factor. [source:refseq;acc:nm\_006693]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227160\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
146079\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
81081\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(z), alpha subunit (g(x) alpha chain) (gz-alpha). [source:swissprot;acc:p19086]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.741\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.02344\vspace{3pt}}\\\cline{3-3}\cline{5-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.369\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.65294\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [source:swissprot;acc:p43365]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein kinase, interferon-inducible double stranded rna dependent activator; protein activator of the interferon-induced protein kinase. [source:refseq;acc:nm\_003690]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
320.927\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
254.434\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
66.493\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17.1626\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
37\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 1 (transducin beta chain 1). [source:swissprot;acc:p04901]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
266.716\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
333.165\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
66.449\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(t), alpha-1 subunit (transducin alpha-1 chain). [source:swissprot;acc:p11488]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.763\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.02339\vspace{3pt}}\\\cline{3-3}\cline{5-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.3691\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.65293\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [source:swissprot;acc:p43355]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17.1626\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27273\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
trs85 homolog. [source:swissprot;acc:q9y2l5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
227160\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
146079\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
81081\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
38\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit 4 (transducin beta chain 4). [source:swissprot;acc:q9hav0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
266.933\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
333.281\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
66.348\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(t), alpha-2 subunit (transducin alpha-2 chain). [source:swissprot;acc:p19087]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.774\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.02337\vspace{3pt}}\\\cline{3-3}\cline{5-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.2804\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.3692\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.65292\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 10 (mage-10 antigen). [source:swissprot;acc:p43363]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27273\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17.1626\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
wd-repeat protein wdc146. [source:swissprot;acc:q9c0j8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
226186\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
145568\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
80618\vspace{3pt}}}\\\cline{1-2}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
39\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cleavage and polyadenylation specificity factor, 160 kda subunit (cpsf 160 kda subunit). [source:swissprot;acc:q10570]\vspace{3pt}}&&&&&\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [source:swissprot;acc:q15485]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17.1626\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i), alpha-2 subunit (adenylate cyclase-inhibiting g alpha protein). [source:swissprot;acc:p04899]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.903\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.02312\vspace{3pt}}\\\cline{3-3}\cline{5-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.28\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.65285\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 3 (transducin beta chain 3). [source:swissprot;acc:p16520]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
268.565\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
334.483\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
65.918\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [source:swissprot;acc:p43366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27273\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/