Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2251 to 2300 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
563\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
disks large-associated protein 1 (dap-1) (guanylate kinase-associated protein) (hgkap) (sap90/psd-95-associated protein 1) (sapap1) (psd- 95/sap90 binding protein 1). [source:swissprot;acc:o14490]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
wiskott-aldrich syndrome protein interacting protein (wasp interacting protein) (prpl-2 protein). [source:swissprot;acc:o43516]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
30408.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36092.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18694\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
564\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cad protein [includes: glutamine-dependent carbamoyl-phosphate synthase (ec 6.3.5.5); aspartate carbamoyltransferase (ec 2.1.3.2); dihydroorotase (ec 3.5.2.3)]. [source:swissprot;acc:p27708]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
25396.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30143.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18693\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
crooked neck-like protein 1 (crooked neck homolog) (hcrn) (cgi-201) (mstp021). [source:swissprot;acc:q9bzj0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.744\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.121\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06577\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative adenosylhomocysteinase 2 (ec 3.3.1.1) (s-adenosyl-l- homocysteine hydrolase) (adohcyase). [source:swissprot;acc:o43865]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein rhoa (h12). [source:swissprot;acc:p06749]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5480.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6222.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13536\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
565\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
fructose-1,6-bisphosphatase (ec 3.1.3.11) (d-fructose-1,6-bisphosphate 1-phosphohydrolase) (fbpase). [source:swissprot;acc:p09467]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25287.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30003.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18649\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
limkain b1. [source:refseq;acc:nm\_019081]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
129.219\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
121.261\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06563\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
small glutamine-rich tetratricopeptide repeat-containing protein (vpu-binding protein) (ubp). [source:swissprot;acc:o43765]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
10434.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11846.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1353\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
566\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
autoantigen ngp-1. [source:swissprot;acc:q13823]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
3766.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4274.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13506\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative adenosylhomocysteinase 3 (ec 3.3.1.1) (s-adenosyl-l- homocysteine hydrolase) (adohcyase). [source:swissprot;acc:q96hn2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
129.219\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
121.261\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06563\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 homolog 3. [source:swissprot;acc:q13892]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
34268.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40650.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18625\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
567\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bet3 homolog. [source:swissprot;acc:o43617]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
129.219\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
121.261\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06563\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cellular repressor of e1a-stimulated genes. [source:refseq;acc:nm\_003851]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial precursor (ec 3.6.1.23) (dutpase) (dutp pyrophosphatase). [source:swissprot;acc:p33316]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10264.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9043.51\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13506\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 (rna polymerase b transcription factor 3). [source:swissprot;acc:p20290]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
34219.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40585.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18602\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
568\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
disks large-associated protein 3 (dap-3) (sap90/psd-95-associated protein 3) (sapap3) (psd-95/sap90 binding protein 3) (fragment). [source:swissprot;acc:o95886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
grpe protein homolog 2, mitochondrial precursor (mt-grpe#2). [source:swissprot;acc:q8taa5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4134.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4691.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13458\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
max protein. [source:swissprot;acc:p25912]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18764.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
22255\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18602\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative pre-mrna splicing factor rna helicase (atp-dependent rna helicase #3) (deah-box protein 16). [source:swissprot;acc:o60231]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06554\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
569\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
grpe protein homolog 1, mitochondrial precursor (mt-grpe#1) (hmge). [source:swissprot;acc:q9hav7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4134.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4691.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13458\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
kininogen precursor (alpha-2-thiol proteinase inhibitor) [contains: bradykinin]. [source:swissprot;acc:p01042]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex associated-testis-expressed 1-like (protein 91/23). [source:swissprot;acc:p51808]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
52623.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44380.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18574\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t54 protein. [source:swissprot;acc:q92917]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06554\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
570\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
disks large-associated protein 2 (dap-2) (sap90/psd-95-associated protein 2) (sapap2) (psd-95/sap90 binding protein 2) (fragment). [source:swissprot;acc:q9p1a6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
double-strand break repair protein mre11a (mre11 homolog 1). [source:swissprot;acc:p49959]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
52623.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44380.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18574\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor arginine/serine-rich 11 (arginine-rich 54 kda nuclear protein) (p54). [source:swissprot;acc:q05519]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
229.709\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.631\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06529\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin d2; rsc6p; mammalian chromatin remodeling complex brg1-associated factor 60b; swp73-like protein; chromatin remodeling complex baf60b subunit; swi/snf complex 60 kda subunit b. [source:refseq;acc:nm\_003077]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4134.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4691.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13458\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
571\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ferritin light chain (ferritin l subunit). [source:swissprot;acc:p02792]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
malate dehydrogenase, mitochondrial precursor (ec 1.1.1.37). [source:swissprot;acc:p40926]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
238.529\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.099\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06528\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-acetylgalactosamine kinase (ec 2.7.1.-) (galnac kinase) (galactokinase 2). [source:swissprot;acc:q01415]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17799.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21105.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1857\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin d3; rsc6p; mammalian chromatin remodeling complex brg1-associated factor 60c; swp73-like protein; chromatin remodeling complex baf60c subunit; swi/snf complex 60 kda subunit c. [source:refseq;acc:nm\_003078]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4134.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4691.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13458\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
572\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cbf1 interacting corepressor. [source:refseq;acc:nm\_004882]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.945\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06504\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
disks large-associated protein 4 (dap-4) (sap90/psd-95-associated protein 4) (sapap4) (psd-95/sap90 binding protein 4). [source:swissprot;acc:q9y2h0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7424\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08324\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
galactose-1-phosphate uridylyltransferase (ec 2.7.7.12) (gal-1-p uridylyltransferase) (udp-glucose--hexose-1-phosphate uridylyltransferase). [source:swissprot;acc:p07902]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17799.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21105.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1857\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf related, matrix associated, actin dependent regulator of chromatin subfamily d member 1 (swi/snf complex 60 kda subunit) (brg1- associated factor 60a). [source:swissprot;acc:q96gm5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4134.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4691.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13458\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
573\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
evolutionarily conserved g-patch domain containing. [source:refseq;acc:nm\_018025]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.945\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06504\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a10 (hox-1h) (hox-1.8) (pl). [source:swissprot;acc:p31260]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.55\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1343\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ferritin; ferritin heavy chain-like; ferritin h subunit. [source:refseq;acc:nm\_177478]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7427\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08323\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
udp-glucose 4-epimerase (ec 5.1.3.2) (galactowaldenase) (udp- galactose 4-epimerase). [source:swissprot;acc:q14376]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17799.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21105.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1857\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
574\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ferritin heavy polypeptide-like 17. [source:swissprot;acc:q9bxu8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7456\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9646\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08318\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hcv ns3-transactivated protein 1. [source:refseq;acc:nm\_019048]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26570.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31504.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18569\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-b9 (hox-2e) (hox-2.5). [source:swissprot;acc:p17482]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13428\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
preimplantation protein 3; likely ortholog of preimplantation protein 3. [source:refseq;acc:nm\_015387]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
221.807\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
208.264\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06503\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
575\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dnaj homolog subfamily b member 11 precursor (er-associated dnaj protein 3) (erj3) (er-associated hsp40 co-chaperone) (hdj9) (pwp1- interacting protein 4). [source:swissprot;acc:q9ubs4]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a9 (hox-1g). [source:swissprot;acc:p31269]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6739.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7644.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13427\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08316\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar atp synthase catalytic subunit a, ubiquitous isoform (ec 3.6.3.14) (v-atpase a subunit 1) (vacuolar proton pump alpha subunit 1) (v-atpase 69 kda subunit 1) (isoform va68). [source:swissprot;acc:p38606]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26570.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31504.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18569\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/