Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
description Rank Gene Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 51 to 100 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxy-3-methylglutaryl-coenzyme a reductase (ec 1.1.1.34) (hmg-coa reductase). [source:swissprot;acc:p04035]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2303\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
191.567\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
192.542\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00509\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxyacyl-coa dehydrogenase type ii (ec 1.1.1.35) (type ii hadh) (endoplasmic reticulum-associated amyloid beta-peptide binding protein) (short-chain type dehydrogenase/reductase xh98g2). [source:swissprot;acc:q99714]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3180\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxyanthranilate 3,4-dioxygenase (ec 1.13.11.6) (3-hao) (3-hydroxyanthranilic acid dioxygenase) (3-hydroxyanthranilate oxygenase). [source:swissprot;acc:p46952]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2189\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
209.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
208.162\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00662\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1852\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
196.008\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
198.154\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01095\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-ketoacyl-coa thiolase, peroxisomal precursor (ec 2.3.1.16) (beta- ketothiolase) (acetyl-coa acyltransferase) (peroxisomal 3-oxoacyl- coa thiolase). [source:swissprot;acc:p09110]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2300\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
191.563\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
192.541\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00511\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-mercaptopyruvate sulfurtransferase (ec 2.8.1.2) (mst). [source:swissprot;acc:p25325]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1025\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
205.632\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.266\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03195\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-oxo-5-alpha-steroid 4-dehydrogenase 1 (ec 1.3.99.5) (steroid 5-alpha-reductase 1) (sr type 1) (s5ar). [source:swissprot;acc:p18405]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1083\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
220.118\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.685\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.03011\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
3-oxo-5-alpha-steroid 4-dehydrogenase 2 (ec 1.3.99.5) (steroid 5-alpha-reductase 2) (sr type 2) (5 alpha-sr2). [source:swissprot;acc:p31213]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1084\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-phosphoinositide dependent protein kinase-1 (ec 2.7.1.37) (hpdk1). [source:swissprot;acc:o15530]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
897\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
272.878\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
283.472\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03882\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
38 kda fk-506 binding protein homolog (fkbpr38) (fk506-binding protein 8). [source:swissprot;acc:q14318]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2358\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
198.181\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
197.346\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00423\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
4-aminobutyrate aminotransferase, mitochondrial precursor (ec 2.6.1.19) (gamma-amino-n-butyrate transaminase) (gaba transaminase) (gaba aminotransferase) (gaba-at) (gaba-t). [source:swissprot;acc:p80404]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1745\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
219.423\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01272\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s11. [source:swissprot;acc:p04643]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
278\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.399\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
267.088\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10642\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s13. [source:swissprot;acc:q02546]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1722\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
220.899\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.813\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01319\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
386\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.238\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
264.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09029\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
304\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.339\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.986\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1017\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s15a. [source:swissprot;acc:p39027]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
292\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.411\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.414\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10357\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s16. [source:swissprot;acc:p17008]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
391\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.828\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
263.62\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09011\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s18 (ke-3) (ke3). [source:swissprot;acc:p25232]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
387\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.238\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
264.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09029\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s19. [source:swissprot;acc:p39019]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
861\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s2 (s4) (llrep3 protein). [source:swissprot;acc:p15880]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
344\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.625\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.136\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0973\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s20. [source:swissprot;acc:p17075]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
342\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
243.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
267.21\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09737\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s21. [source:swissprot;acc:p35265]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
790\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s23. [source:swissprot;acc:p39028]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
324\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
243.944\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
268.195\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09941\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s24 (s19). [source:swissprot;acc:p16632]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1690\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
224.091\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.184\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0138\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s26. [source:swissprot;acc:p02383]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
454\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
210.224\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.578\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07779\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s27 (metallopan-stimulin 1) (mps-1). [source:swissprot;acc:p42677]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1102\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
229.442\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
235.974\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02847\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1982\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
200.343\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
198.427\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00966\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s29. [source:swissprot;acc:p30054]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
277\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.849\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
267.642\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10665\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s3. [source:swissprot;acc:p23396]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
346\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.612\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.119\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s30. [source:swissprot;acc:q05472]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1081\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.44\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.875\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03027\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s3a. [source:swissprot;acc:p49241]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
867\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
225.689\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.674\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03981\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [source:swissprot;acc:p12750]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
288\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
240.758\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
266.078\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10517\vspace{3pt}}}\\\cline{1-2}\cline{4-4}
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s4, y isoform 2. [source:swissprot;acc:q8td47]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
287\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
266.079\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s5. [source:swissprot;acc:p46782]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
366\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
242.473\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.756\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09602\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s7 (s8). [source:swissprot;acc:p23821]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2149\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
217.871\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.366\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00686\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s8. [source:swissprot;acc:p09058]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1397\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.049\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02145\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s9. [source:swissprot;acc:p46781]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
439\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
238.986\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
257.784\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07866\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein sa (p40) (34/67 kda laminin receptor) (colon carcinoma laminin-binding protein) (nem/1chd4) (multidrug resistance- associated protein mgr1-ag). [source:swissprot;acc:p08865]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
789\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
224.244\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.511\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04578\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
43 kda receptor-associated protein of the synapse (rapsyn) (acetylcholine receptor-associated 43 kda protein) (43 kda postsynaptic protein). [source:swissprot;acc:q13702]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2232\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
215.547\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.194\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00632\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
44050 protein. [source:refseq;acc:nm\_178832]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2506\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
151.386\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
151.009\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0025\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
45 kda calcium-binding protein precursor (cab45) (stromal cell-derived factor 4) (sdf-4). [source:swissprot;acc:q9brk5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2147\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
206.442\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.862\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00688\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-1 subunit (ampk beta-1 chain) (ampkb). [source:swissprot;acc:q9y478]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
879\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
212.002\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
203.954\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.03946\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-2 subunit (ampk beta-2 chain). [source:swissprot;acc:o43741]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
877\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-1 chain (ec 2.7.1.-) (ampk alpha-1 chain). [source:swissprot;acc:q13131]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
876\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-2 chain (ec 2.7.1.-) (ampk alpha-2 chain). [source:swissprot;acc:p54646]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
875\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-1 subunit (ampk gamma-1 chain) (ampkg). [source:swissprot;acc:p54619]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
874\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-2 subunit (ampk gamma-2 chain) (ampk gamma2) (h91620p). [source:swissprot;acc:q9ugj0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
880\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-3 subunit (ampk gamma-3 chain) (ampk gamma3). [source:swissprot;acc:q9ugi9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
878\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
5'-methylthioadenosine phosphorylase (ec 2.4.2.28) (mta phosphorylase) (mtapase). [source:swissprot;acc:q13126]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1769\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.016\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.734\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01219\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
5,6-dihydroxyindole-2-carboxylic acid oxidase precursor (ec 1.14.18.-) (dhica oxidase) (tyrosinase-related protein 1) (trp-1) (trp1) (trp) (catalase b) (glycoprotein-75) (melanoma antigen gp75). [source:swissprot;acc:p17643]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1021\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
221.278\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.409\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03204\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/