Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank description Gene Network Comparison Type Interaction Map Filtered Value Type red green network_comparison
Results: HTML CSV LaTeX Showing element 1001 to 1050 of 66312 in total 
Filtered: 1

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
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\def\wcF{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
63\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
myosin xv (unconventional myosin-15). [source:swissprot;acc:q9ukn7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4489.19\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2765.82\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.6231\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear factor erythroid 2 related factor 2 (nf-e2 related factor 2) (nfe2-related factor 2) (nuclear factor, erythroid derived 2, like 2) (hebp1). [source:swissprot;acc:q16236]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
79.2778\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
86.7076\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.4298\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear transcription factor y subunit gamma (nf-y protein chain c) (nuclear factor yc) (nf-yc) (ccaat-binding transcription factor subunit c) (cbf-c) (transactivator hsm-1/2). [source:swissprot;acc:q13952]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
260.532\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
204.309\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56.223\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative rna-binding protein 7 (rna binding motif protein 7). [source:swissprot;acc:q9y580]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
265.688\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
239.902\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10749\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related gtp binding b short isoform; gtp-binding protein ragb. [source:refseq;acc:nm\_006064]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10618.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11681.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1062.5\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase pp1-alpha 1 catalytic subunit (ec 3.1.3.16) (pp-1a). [source:swissprot;acc:p08129]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
189976\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
124480\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
65496\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
spermatogenesis associated 6. [source:refseq;acc:nm\_019073]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6475.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10307.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3832\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-box transcription factor tbx19 (t-box protein 19). [source:swissprot;acc:o60806]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
61.4851\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
68.1264\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10801\vspace{3pt}}\\\cline{1-2}\cline{4-4}\cline{6-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
64\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [source:swissprot;acc:q04446]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
63.8686\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
47.2654\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.35128\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
amp deaminase 2 (ec 3.5.4.6) (amp deaminase isoform l). [source:swissprot;acc:q01433]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6475.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10307.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3832\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat-binding transcription factor subunit b (cbf-b) (nf-y protein chain a) (nf-ya) (caat-box dna binding protein subunit a). [source:swissprot;acc:p23511]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
260.532\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
204.309\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56.223\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [source:refseq;acc:nm\_052936]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
144940\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
81169.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
63770.3\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
fos-related antigen 2. [source:swissprot;acc:p15408]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.793\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
182.961\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
19.832\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen phosphorylase, muscle form (ec 2.4.1.1) (myophosphorylase). [source:swissprot;acc:p11217]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4489.19\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2765.82\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.6231\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-11 subunit. [source:swissprot;acc:p50152]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.868\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
336.159\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.25965\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma antigen, family b, 6. [source:refseq;acc:nm\_173523]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
129762\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [source:swissprot;acc:p43366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
137.446\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
120.823\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
16.623\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
neurochondrin. [source:refseq;acc:nm\_014284]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
73677.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
57498.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.28138\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
rab11-family interacting protein 4. [source:refseq;acc:nm\_032932]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
73.6221\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
81.4944\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10693\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related gtp binding a; ras-related gtp-binding protein. [source:refseq;acc:nm\_006570]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10585.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11638.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1053.1\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinal short-chain dehydrogenase/reductase 3. [source:refseq;acc:nm\_016246]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
15464.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17572.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.13635\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 7 (cdc10 protein homolog). [source:swissprot;acc:q16181]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
66860.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
80573.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13713.3\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor jun-d. [source:swissprot;acc:p17535]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.709\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
183.361\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10552\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription regulator protein bach2 (btb and cnc homolog 2). [source:swissprot;acc:q9byv9]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
79.2778\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
86.7076\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.4298\vspace{3pt}}\\\cline{1-2}\cline{5-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
65\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
brca1 associated protein. [source:refseq;acc:nm\_006768]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
83524.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
69821.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13703.3\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cleavage stimulation factor subunit 3; cleavage stimulation factor, 3' pre-rna, subunit 3, 77kd. [source:refseq;acc:nm\_001326]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
22515.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18702.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3812.9\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
dj310o13.4 (novel protein similar to predicted c. elegans and c. intestinalis proteins) (fragment). [source:sptrembl;acc:q9nug5]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
75.1927\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
82.5511\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.3584\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
eferin. [source:swissprot;acc:o75154]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
73.6221\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
81.4944\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10693\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen phosphorylase, brain form (ec 2.4.1.1). [source:swissprot;acc:p11216]\vspace{3pt}}&&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
63.8686\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
47.2654\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.35128\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(q), alpha subunit. [source:swissprot;acc:p50148]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.136\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
336.077\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.25807\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [source:swissprot;acc:p43358]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
129762\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen d2 (mage-d2 antigen) (breast cancer associated gene 1 protein) (bcg-1) (11b6) (hepatocellular carcinoma associated protein jcl-1). [source:swissprot;acc:q9unf1]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
137.446\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
120.823\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
16.623\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-associated proteins 1a/1b light chain 3b (map1a/map1b lc3 b) (map1a/1b light chain 3 b). [source:swissprot;acc:q9gzq8]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
144912\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
81155\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
63757\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuralized-like. [source:refseq;acc:nm\_004210]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1657.68\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2690.25\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.6229\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein fosb (g0/g1 switch regulatory protein 3). [source:swissprot;acc:p53539]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.792\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
182.974\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
19.818\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 6. [source:swissprot;acc:q14141]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13005.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14773.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.13593\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin-like protein kiaa0202 (fragment). [source:swissprot;acc:q92599]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
75490.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
95493.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.26497\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, alpha isoform (pp2a, subunit b, b-alpha isoform) (pp2a, subunit b, b55-alpha isoform) (pp2a, subunit b, pr55-alpha isoform) (pp2a, subunit b, r2-alpha isoform). [source:swissprot;acc:q00007]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
187.457\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
243.678\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56.221\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
thyroid receptor interacting protein 8 (trip-8) (fragment). [source:swissprot;acc:q15652]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1917.64\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2950.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1032.86\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor jun-b. [source:swissprot;acc:p17275]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.728\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
183.388\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10546\vspace{3pt}}\\\hline
\multirow{10}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
66\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
a-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (a-raf-1) (proto-oncogene pks). [source:swissprot;acc:p10398]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17757.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14008\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3749.5\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
dab2 interacting protein; ngap-like protein; doc-2/dab2 interactive protein. [source:refseq;acc:nm\_032552]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
55.8923\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
61.8016\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.10573\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
fos-related antigen 1 (fra-1). [source:swissprot;acc:p15407]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
202.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
183.017\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
19.773\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
gbp protein isoform a. [source:refseq;acc:nm\_017870]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1921.96\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2954.24\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1032.28\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glucosamine-6-phosphate isomerase. [source:refseq;acc:nm\_138335]\vspace{3pt}}&&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
52.3425\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
45.0567\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7.2858\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen phosphorylase, liver form (ec 2.4.1.1). [source:swissprot;acc:p06737]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
63.8686\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
47.2654\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.35128\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(y), alpha subunit (alpha-11). [source:swissprot;acc:p29992]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.136\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
336.077\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.25807\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
hira-interacting protein 5 (cgi-33). [source:swissprot;acc:q9ums0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
60583.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
74280\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13696.3\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 9 (mage-9 antigen). [source:swissprot;acc:p43362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
129762\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-associated proteins 1a/1b light chain 3a (map1a/map1b lc3 a) (map1a/1b light chain 3 a). [source:swissprot;acc:q9h492]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
144911\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
81154.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
63756.3\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/