Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo description Network Comparison Type Value Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 725 to 774 of 6456 in total 
Value Type: Ranked
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
363\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
SETMAR\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
set domain and mariner transposase fusion gene. [source:refseq;acc:nm\_006515]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.658\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SHROOM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
shroom-related protein; f-actin-binding protein; likely ortholog of mouse shroom. [source:refseq;acc:nm\_020859]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
231.481\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
211.131\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09639\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
364\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLEC4M\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cd209 antigen-like; putative type ii membrane protein. [source:refseq;acc:nm\_014257]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.658\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
POLR2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 140 kda polypeptide (ec 2.7.7.6) (rna polymerase ii subunit 2) (rpb2). [source:swissprot;acc:p30876]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.208\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.617\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09625\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
365\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
FCER2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
low affinity immunoglobulin epsilon fc receptor (lymphocyte ige receptor) (fc-epsilon-rii) (cd23) (blast-2) (immunoglobulin e-binding factor). [source:swissprot;acc:p06734]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.658\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL36\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l36, mitochondrial precursor (l36mt) (brca1- interacting protein 1). [source:swissprot;acc:q9p0j6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.744\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.07\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09609\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
366\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CD209\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cd209 antigen; dendritic cell-specific icam3-grabbing nonintegrin. [source:refseq;acc:nm\_021155]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.658\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPS5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s5. [source:swissprot;acc:p46782]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.473\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.756\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09602\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
367\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DPP9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dipeptidylpeptidase 9; dipeptidyl peptidase 9; dipeptidyl peptidase iv-related protein-2. [source:refseq;acc:nm\_139159]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.827\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
238.407\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.58\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
HNRPM\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein m (hnrnp m). [source:swissprot;acc:p52272]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.146\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
256.627\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09601\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
368\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DPP8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dipeptidyl peptidase 8 isoform 2; dipeptidyl peptidase 8. [source:refseq;acc:nm\_017743]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.827\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
238.407\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.58\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PUS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
trna pseudouridine synthase a (ec 4.2.1.70) (pseudouridylate synthase i) (pseudouridine synthase i) (uracil hydrolyase). [source:swissprot;acc:q9y606]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.715\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09501\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
369\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l12, mitochondrial precursor (l12mt) (5c5-2). [source:swissprot;acc:p52815]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
242.159\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.104\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09475\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
POLR2E\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 23 kda polypeptide (ec 2.7.7.6) (rpb25) (xap4) (rpb5) (rpabc1). [source:swissprot;acc:p19388]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
239.977\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
259.525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.548\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
370\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ITGB1BP3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
muscle-specific beta 1 integrin binding protein. [source:refseq;acc:nm\_014446]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
218.818\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
238.358\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.54\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
NUDT12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nudix (nucleoside diphosphate linked moiety x)-type motif 12. [source:refseq;acc:nm\_031438]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.159\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.104\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09475\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
371\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS6KC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribosomal protein s6 kinase, 52kda, polypeptide 1; ribosomal protein s6 kinase, 52kd, polypeptide 1. [source:refseq;acc:nm\_012424]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
186.52\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
170.42\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09447\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC15A1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligopeptide transporter, small intestine isoform (peptide transporter 1) (intestinal h+/peptide cotransporter) (solute carrier family 15, member 1). [source:swissprot;acc:p46059]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
186.172\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
166.661\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.511\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
372\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribosomal protein s6 kinase-like 1. [source:refseq;acc:nm\_031464]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
186.52\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
170.42\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09447\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
POLR3G\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
polymerase (rna) iii (dna directed) (32kd). [source:refseq;acc:nm\_006467]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
239.709\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
259.038\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.329\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
373\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DCTN5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dynactin 4. [source:refseq;acc:nm\_032486]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
233.142\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
252.253\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.111\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l11, mitochondrial precursor (l11mt) (cgi-113). [source:swissprot;acc:q9y3b7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.255\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09442\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
374\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CHRNA7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-7 chain precursor. [source:swissprot;acc:p36544]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
248.152\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.226\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.074\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TFDP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
267.208\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
244.168\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09436\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
375\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ADCY6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylate cyclase, type vi (ec 4.6.1.1) (atp pyrophosphate-lyase) (ca(2+)-inhibitable adenylyl cyclase). [source:swissprot;acc:o43306]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
248.152\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.226\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.074\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
POLR3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase iii largest subunit (ec 2.7.7.6) (rpc155) (rpc1). [source:swissprot;acc:o14802]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.686\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.516\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09407\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
376\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ADCY5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylate cyclase, type v (ec 4.6.1.1) (atp pyrophosphate-lyase) (adenylyl cyclase) (fragment). [source:swissprot;acc:o95622]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
248.152\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.226\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.074\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
DDX56\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
probable atp-dependent 61 kda nucleolar rna helicase (dead-box protein 21). [source:swissprot;acc:q9ny93]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.017\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
234.945\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09395\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
377\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
LRRC15\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
leucine-rich repeat-containing protein 15 precursor (hlib). [source:swissprot;acc:q8tf66]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
248.152\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.226\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.074\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
POLR1A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase i largest subunit (ec 2.7.7.6) (rna polymerase i 194 kda subunit) (rpa194). [source:swissprot;acc:o95602]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.481\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09391\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
378\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
FEM1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fem-1 homolog b; fem-1-like death receptor binding protein; fem-1 (c.elegans) homolog b. [source:refseq;acc:nm\_015322]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
248.152\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.226\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.074\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPL30\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l30. [source:swissprot;acc:p04645]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.593\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
265.365\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09387\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
379\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AK2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 2, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p54819]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
241.509\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
264.163\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0938\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
LRRC3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
leucine-rich repeat protein lrrc3 precursor. [source:swissprot;acc:q9by71]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
248.152\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.226\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.074\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
380\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
suppressor of ty 5 homolog; suppressor of ty (s.cerevisiae) 5 homolog. [source:refseq;acc:nm\_003169]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.109\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
264.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09368\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
LAMC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
laminin gamma-1 chain precursor (laminin b2 chain). [source:swissprot;acc:p11047]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
248.152\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
267.226\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
19.074\vspace{3pt}}}\\\cline{1-3}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
381\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC46A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
thymic stromal co-transporter. [source:refseq;acc:nm\_033051]\vspace{3pt}}&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TAF7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription initiation factor tfiid 55 kda subunit (tafii-55) (tafii55). [source:swissprot;acc:q15545]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
200.586\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
183.423\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09357\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
382\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX54\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
atp-dependent rna helicase mgc2835; atp-dependent rna helicase; apoptosis related protein apr-5; dead box helicase 97 kda. [source:refseq;acc:nm\_024072]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.852\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
234.808\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.044\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TAF7L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tata box binding protein-associated factor, rna polymerase ii, q; taf7-like rna polymerase ii, tata box binding protein (tbp)-associated factor, 50 kd; tbp-associated factor, rna polymerase ii, q. [source:refseq;acc:nm\_024885]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
200.791\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
183.66\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09328\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
383\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
RBM39\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rna-binding region containing protein 2 (hepatocellular carcinoma protein 1) (splicing factor hcc1). [source:swissprot;acc:q14498]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
237.862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
217.739\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09242\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
TRUB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
trub pseudouridine (psi) synthase homolog 1. [source:refseq;acc:nm\_139169]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
236.245\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
255.113\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.868\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
384\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
227.575\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.756\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.819\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
E2F1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor e2f1 (e2f-1) (retinoblastoma binding protein 3) (rbbp-3) (prb-binding protein e2f-1) (pbr3) (retinoblastoma-associated protein 1) (rbap-1). [source:swissprot;acc:q01094]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
266.421\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
244.236\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1.09083\vspace{3pt}}}\\\cline{1-3}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
385\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
E2F2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor e2f2 (e2f-2). [source:swissprot;acc:q14209]\vspace{3pt}}&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein f (snrnp-f) (sm protein f) (sm-f) (smf). [source:swissprot;acc:q15356]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.575\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.756\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.819\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
386\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS14\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.238\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
264.11\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09029\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPS9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s9. [source:swissprot;acc:p46781]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
238.986\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
257.784\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.798\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
387\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s18 (ke-3) (ke3). [source:swissprot;acc:p25232]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.238\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
264.11\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09029\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATG4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [source:refseq;acc:nm\_052936]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.6768\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
75.3531\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.6763\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/