Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 908 to 957 of 3228 in total 
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
908\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
basic helix-loop-helix domain containing, class b, 5; trinucleotide repeat containing 20. [source:refseq;acc:nm\_152414]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
11848.8\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10770.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10014\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
909\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
kinesin family member c3. [source:refseq;acc:nm\_005550]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5995.49\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6595.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10005\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
910\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
sipl protein. [source:refseq;acc:nm\_018269]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6522.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7175.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09999\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
911\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
prefoldin subunit 5 (c-myc binding protein mm-1) (myc modulator 1). [source:swissprot;acc:q99471]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4982.81\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5480.91\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09996\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
912\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
prefoldin subunit 6 (protein ke2). [source:swissprot;acc:o15212]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
913\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ww domain binding protein 2 (wbp-2). [source:swissprot;acc:q969t9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5768.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6342.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09943\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
914\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cathepsin b precursor (ec 3.4.22.1) (cathepsin b1) (app secretase). [source:swissprot;acc:p07858]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6513.45\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7161\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09942\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
915\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome b5 reductase b5r.2. [source:refseq;acc:nm\_016229]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6289.72\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6911.96\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09893\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
916\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome b5 reductase 1 (b5r.1). [source:refseq;acc:nm\_016243]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
917\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-cytochrome b5 reductase (ec 1.6.2.2) (b5r). [source:swissprot;acc:p00387]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
918\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
scratch; scratch 1. [source:refseq;acc:nm\_031309]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7281.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8001.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09888\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
919\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
limbic system-associated membrane protein precursor (lsamp). [source:swissprot;acc:q13449]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5396.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5929.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09878\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
920\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj850e9.1 (novel c2h2 type zinc finger protein similar to drosophila scratch (scrt), slug and xenopus snail) (fragment). [source:sptrembl;acc:q9nq03]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7273.78\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7991.72\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0987\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
921\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
translation initiation factor if-2, mitochondrial precursor (if-2mt) (if-2(mt)). [source:swissprot;acc:p46199]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6324.31\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6948.5\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
922\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tubulin-tyrosine ligase. [source:refseq;acc:nm\_153712]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5511.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6054.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09862\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
923\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 3 subunit 8 (eif3 p110) (eif3c). [source:swissprot;acc:q99613]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4057.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4457.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09861\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
924\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
opioid binding protein/cell adhesion molecule precursor (obcam) (opioid-binding cell adhesion molecule) (opcml). [source:swissprot;acc:q14982]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5406.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5939.42\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09857\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
925\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial precursor (ec 2.7.1.99) (pyruvate dehydrogenase kinase isoform 1). [source:swissprot;acc:q15118]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5637.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6193.07\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09856\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
926\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
[pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial precursor (ec 2.7.1.99) (pyruvate dehydrogenase kinase isoform 2). [source:swissprot;acc:q15119]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5637.45\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6193.08\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
927\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidylpeptidase 10; dipeptidyl peptidase iv-related protein 3. [source:refseq;acc:nm\_020868]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5638.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6194.22\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09853\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
928\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c oxidase assembly protein cox11, mitochondrial precursor. [source:swissprot;acc:q9y6n1]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5638.46\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6194.04\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
929\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
surfeit locus protein 1. [source:swissprot;acc:q15526]\vspace{3pt}}&&&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
930\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidyl aminopeptidase-like protein 6 (dipeptidylpeptidase vi) (dipeptidylpeptidase 6) (dipeptidyl peptidase iv like protein) (dipeptidyl aminopeptidase-related protein) (dppx). [source:swissprot;acc:p42658]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5638.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6194.23\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
931\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
seprase (ec 3.4.21.-) (fibroblast activation protein alpha) (integral membrane serine protease) (170-kda melanoma membrane-bound gelatinase). [source:swissprot;acc:q12884]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5638.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6194.17\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
932\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cox15 homolog isoform 2 precursor; cytochrome c oxidase subunit 15; cytochrome c oxidase assembly protein. [source:refseq;acc:nm\_004376]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5638.46\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6194.04\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
933\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protoheme ix farnesyltransferase, mitochondrial precursor (ec 2.5.1.-) (heme o synthase). [source:swissprot;acc:q12887]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
934\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial precursor (ec 2.7.1.115) (branched-chain alpha-ketoacid dehydrogenase kinase) (bckdhkin) (bckd-kinase). [source:swissprot;acc:o14874]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5640\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6195.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0985\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
935\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
neurotrimin precursor (hnt). [source:swissprot;acc:q9p121]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5413.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5946.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09842\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
936\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nif3-like protein 1 (amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 1) (my018 protein) (mds015). [source:swissprot;acc:q9gzt8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5628.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6180.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09811\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
937\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nucleobindin 1 precursor (calnuc). [source:swissprot;acc:q02818]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5859.25\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6432.03\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09776\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
938\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna mismatch repair protein mlh1 (mutl protein homolog 1). [source:swissprot;acc:p40692]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
939\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nucleobindin 2 precursor (dna-binding protein nefa). [source:swissprot;acc:p80303]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
940\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenosylhomocysteinase (ec 3.3.1.1) (s-adenosyl-l-homocysteine hydrolase) (adohcyase). [source:swissprot;acc:p23526]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5568.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6113.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09775\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
941\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
caax prenyl protease 1 homolog (ec 3.4.24.-) (prenyl protein-specific endoprotease 1) (farnesylated-proteins converting enzyme 1) (face-1) (zinc metalloproteinase ste24 homolog). [source:swissprot;acc:o75844]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4970.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5455.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09761\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
942\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphoglycerate kinase, testis specific (ec 2.7.2.3). [source:swissprot;acc:p07205]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6597.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7240.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09747\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
943\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
gamma enolase (ec 4.2.1.11) (2-phospho-d-glycerate hydro-lyase) (neural enolase) (nse) (enolase 2). [source:swissprot;acc:p09104]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6597.98\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
7241\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09746\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
944\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
beta enolase (ec 4.2.1.11) (2-phospho-d-glycerate hydro-lyase) (skeletal muscle enolase) (mse) (enolase 3). [source:swissprot;acc:p13929]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
945\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
alpha enolase (ec 4.2.1.11) (2-phospho-d-glycerate hydro-lyase) (non- neural enolase) (nne) (enolase 1) (phosphopyruvate hydratase). [source:swissprot;acc:p06733]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
946\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphoglycerate kinase 1 (ec 2.7.2.3) (primer recognition protein 2) (prp 2). [source:swissprot;acc:p00558]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6598.37\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7241.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09744\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
947\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducing adaptor molecule 1; signal transducing adaptor molecule. [source:refseq;acc:nm\_003473]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
11797.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10750.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09738\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
948\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
caspase-7 precursor (ec 3.4.22.-) (ice-like apoptotic protease 3) (ice-lap3) (apoptotic protease mch-3) (cmh-1). [source:swissprot;acc:p55210]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4633.48\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5084.24\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
949\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
apopain precursor (ec 3.4.22.-) (cysteine protease cpp32) (yama protein) (cpp-32) (caspase-3) (casp-3) (srebp cleavage activity 1) (sca-1). [source:swissprot;acc:p42574]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
950\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
bystin. [source:swissprot;acc:q13895]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4280.99\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4697.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09718\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
951\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dimethylaniline monooxygenase [n-oxide forming] 5 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 5) (fmo 5) (dimethylaniline oxidase 5). [source:swissprot;acc:p49326]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5364.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5885.48\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09716\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
952\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative dimethylaniline monooxygenase [n-oxide forming] 6 (ec 1.14.13.8) (flavin-containing monooxygenase 6) (fmo 6) (dimethylaniline oxidase 6). [source:swissprot;acc:o60774]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
953\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase i alpha s-like. [source:refseq;acc:nm\_145203]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4906.33\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5382.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09705\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
954\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase i, alpha isoform (ec 2.7.1.-) (cki-alpha) (ck1). [source:swissprot;acc:p48729]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
955\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
uridine kinase-like 1. [source:swissprot;acc:q9nwz5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5548.78\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6086.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09698\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
956\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dimethylaniline monooxygenase [n-oxide forming] 3 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 3) (fmo 3) (dimethylaniline oxidase 3) (fmo form 2) (fmo ii). [source:swissprot;acc:p31513]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5364.77\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5884.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09695\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
957\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
structure-specific recognition protein 1 (ssrp1) (recombination signal sequence recognition protein) (t160) (chromatin-specific transcription elongation factor 80 kda subunit) (fact 80 kda subunit). [source:swissprot;acc:q08945]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4483.26\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4917.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09692\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/