Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 868 to 917 of 8289 in total 
Value Type: Measured
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
434\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5246.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6037.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15077\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
435\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 51a1 (ec 1.14.13.70) (cypli) (p450li) (sterol 14-alpha demethylase) (lanosterol 14-alpha demethylase) (ldm) (p450-14dm). [source:swissprot;acc:q16850]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7740.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8139.75\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05154\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
proline synthetase co-transcribed bacterial homolog protein. [source:swissprot;acc:o94903]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5233.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6022.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1507\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
436\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
arg/abl-interacting protein 2 isoform 2; arg binding protein 2. [source:refseq;acc:nm\_021069]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6230.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7168.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15042\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
brain protein 16. [source:refseq;acc:nm\_016458]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
8822.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9277.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05152\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
437\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
proactivator polypeptide precursor [contains: saposin a (protein a); saposin b (sphingolipid activator protein 1) (sap-1) (cerebroside sulfate activator) (csact) (dispersin) (sulfatide/gm1 activator); saposin c (co-beta-glucosidase) (a1 activator) (glucosylceramidase activator) (sphingolipid activator protein 2) (sap-2); saposin d (protein c) (component c)]. [source:swissprot;acc:p07602]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7789.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8190.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05138\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of swi4 1 homolog (ssf-1) (peter pan homolog). [source:swissprot;acc:q9nq55]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3779.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4348.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15042\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
438\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
sirtuin 7; sir2-related protein type 7; sirtuin type 7; sirtuin (silent mating type information regulation 2, s.cerevisiae, homolog) 7; silent mating type information regulation 2, s.cerevisiae, homolog 7; sirtuin silent mating type information regulation 2 homolog 7 (s. cerevisiae). [source:refseq;acc:nm\_016538]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7591.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7981.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05137\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related, matrix-associated, actin-dependent regulator of chromatin subfamily f member 1 (swi-snf complex protein p270) (b120). [source:swissprot;acc:o14497]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6252.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15039\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
439\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ectonucleoside triphosphate diphosphohydrolase 6 (ec 3.6.1.6) (ntpdase6) (cd39 antigen-like 2). [source:swissprot;acc:o75354]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8886.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9342.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0513\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 6 (probable calcium-binding protein alg- 2). [source:swissprot;acc:o75340]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6252.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15039\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
440\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-dependent protease, small subunit (calpain regulatory subunit) (calcium-activated neutral proteinase) (canp). [source:swissprot;acc:p04632]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6251.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
forkhead box protein p3 (zinc finger protein jm2) (scurfin). [source:swissprot;acc:q9bzs1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6368.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6694.68\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0512\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
441\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
grancalcin. [source:swissprot;acc:p28676]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6251.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar atp synthase subunit g 2 (ec 3.6.3.14) (v-atpase g subunit 2) (vacuolar proton pump g subunit 2) (v-atpase 13 kda subunit 2). [source:swissprot;acc:o95670]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7787.16\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8185.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05114\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
442\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
p53-related protein kinase (ec 2.7.1.-) (nori-2). [source:swissprot;acc:q96s44]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8998.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9458.43\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0511\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorcin (22 kda protein) (cp-22) (v19). [source:swissprot;acc:p30626]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6251.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.17\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
443\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
brg1-binding protein eld/osa1; eld (eyelid)/osa protein. [source:refseq;acc:nm\_020732]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6252.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.51\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm4 (glycine-rich protein) (grp). [source:swissprot;acc:q9y4z0]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7831.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8229.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05084\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
444\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear protein skip (ski-interacting protein) (snw1 protein) (nuclear receptor coactivator ncoa-62). [source:swissprot;acc:q13573]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8633.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9072.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05079\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable rrna processing protein ebp2 (ebna1 binding protein 2) (nucleolar protein p40). [source:swissprot;acc:q99848]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
3758.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4322.87\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15011\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
445\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ad24 protein. [source:refseq;acc:nm\_022451]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
3753.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4315.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14978\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
forkhead box protein p1 (hspc215). [source:swissprot;acc:q9h334]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6398.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6723.57\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05074\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
446\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
forkhead box p4; fork head-related protein like a; winged-helix repressor foxp4. [source:refseq;acc:nm\_138457]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6399.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6724.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05073\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleostemin; putative nucleotide binding protein, estradiol-induced. [source:refseq;acc:nm\_014366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3766.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4329.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14958\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
447\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
o-sialoglycoprotein endopeptidase. [source:refseq;acc:nm\_017807]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8896.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9347.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05072\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pescadillo homolog 1. [source:swissprot;acc:o00541]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
3751.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4310.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14922\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
448\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ponsin; sh3-domain protein 5 (ponsin). [source:refseq;acc:nm\_015385]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6259.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7190.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14884\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thioredoxin-like; pkc-interacting cousin of thioredoxin. [source:refseq;acc:nm\_006541]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
8909.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9360.97\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05065\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
449\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
formin binding protein 3; fas-ligand associated factor 1; huntingtin-interacting protein a; ny-ren-6 antigen. [source:refseq;acc:nm\_017892]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7786.29\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8179.81\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05054\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
wd-repeat protein 12 (ytm1 homolog). [source:swissprot;acc:q9gzl7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3761.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4319.69\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14837\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
450\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin 6 (aquaporin-2 like) (hkid). [source:swissprot;acc:q13520]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8858.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9305.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05049\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
l-myc-1 proto-oncogene protein. [source:swissprot;acc:p12524]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
4889.21\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5610.52\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14753\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
451\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-myc proto-oncogene protein. [source:swissprot;acc:p04198]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
4889.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5610.69\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14745\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3a subunit 2 (spliceosome associated protein 62) (sap 62) (sf3a66). [source:swissprot;acc:q15428]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
7870.27\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
8267.28\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.05044\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
452\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
krueppel-like factor 5 (intestinal-enriched krueppel-like factor) (colon krueppel-like factor) (transcription factor bteb2) (basic transcription element binding protein 2) (bte-binding protein 2) (gc box binding protein 2). [source:swissprot;acc:q13887]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger-like protein 9. [source:refseq;acc:nm\_033414]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3760.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4315.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14738\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
453\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
huntingtin-interacting protein hypa/fbp11 (fragment). [source:sptrembl;acc:o75404]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7787.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8180.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05043\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
membrane-associated transporter protein (aim-1 protein) (melanoma antigen aim1). [source:swissprot;acc:q9umx9]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
3760.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
4315.06\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.14738\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
454\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein-like 1 (gtp-binding protein hsr1). [source:swissprot;acc:p36915]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable serine/threonine protein kinase snf1lk (ec 2.7.1.-). [source:swissprot;acc:p57059]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8418.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8843.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05041\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
455\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ga binding protein alpha chain (gabp-alpha subunit) (transcription factor e4tf1-60) (nuclear respiratory factor-2 subunit alpha). [source:swissprot;acc:q06546]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4890.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5610.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14731\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear matrix protein nmp200 related to splicing factor prp19. [source:refseq;acc:nm\_014502]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7849.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8245.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05041\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
456\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ga binding protein beta-2 chain (gabp-beta-2 subunit) (transcription factor e4tf1-47) (gapbp-2) (nuclear respiratory factor-2 subunit gamma). [source:swissprot;acc:q06545]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4890.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5610.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14731\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
single-stranded dna-binding protein, mitochondrial precursor (mt-ssb) (mtssb) (pwp1-interacting protein 17). [source:swissprot;acc:q04837]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8418.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8843.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05041\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
457\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 23 kda subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-23kd) (ci-23kd) (tyky subunit). [source:swissprot;acc:o00217]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4890.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5610.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14731\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, alpha isoform (pp2a, b subunit, b' alpha isoform) (pp2a, b subunit, b56 alpha isoform) (pp2a, b subunit, pr61 alpha isoform) (pp2a, b subunit, r5 alpha isoform). [source:swissprot;acc:q15172]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7577.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7958.42\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05033\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
458\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dnaj homolog subfamily c member x (beta cysteine string protein) (beta-csp). [source:swissprot;acc:q9uf47]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8945.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9395.73\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05029\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
elongation of very long chain fatty acids protein 1 (cgi-88). [source:swissprot;acc:q9bw60]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4890.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5610.96\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14731\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
459\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dnaj homolog subfamily c member 5 (cysteine string protein) (csp). [source:swissprot;acc:q9h3z4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8946.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9395.86\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05028\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/