Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo description Network Comparison Type Value Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 1 to 50 of 12912 in total
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
RINT1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBAC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
10\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.4\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{2-7}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
RHOBTB2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
3\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
HLX\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
HBS1L\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
5\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
JPH3\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
6\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
JPH2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
HLX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-7}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
SMPD2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
sphingomyelin phosphodiesterase 2 (ec 3.1.4.12) (neutral sphingomyelinase) (nsmase) (n-smase) (lyso-platelet activating factor- phospholipase c) (lyso-paf-plc). [source:swissprot;acc:o60906]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
8\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
HBS1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-7}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
TMEM33\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
9\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
TOB2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
tob2 protein (transducer of erbb-2 2). [source:swissprot;acc:q14106]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
XAB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
212\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
309\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1.45755\vspace{3pt}}}\\\cline{1-3}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
10\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATPBD1C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&&&&\\\cline{2-7}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
TOB1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
tob1 protein (transducer of erbb-2 1). [source:swissprot;acc:p50616]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
11\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
DAB2IP\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
dab2 interacting protein; ngap-like protein; doc-2/dab2 interactive protein. [source:refseq;acc:nm\_032552]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RINT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.45259\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
12\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
CPEB4\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 4. [source:refseq;acc:nm\_030627]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
RHOBTB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.45259\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
13\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
CPEB3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 3. [source:refseq;acc:nm\_014912]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{4-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/