Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 828 to 877 of 3228 in total 
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

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\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
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\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
828\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
puromycin-sensitive aminopeptidase (ec 3.4.11.-) (psa). [source:swissprot;acc:p55786]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5745.61\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6354.75\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10602\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
829\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
leukotriene a-4 hydrolase (ec 3.3.2.6) (lta-4 hydrolase) (leukotriene a(4) hydrolase). [source:swissprot;acc:p09960]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
830\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dihydroorotate dehydrogenase, mitochondrial precursor (ec 1.3.3.1) (dihydroorotate oxidase) (dhodehase) (fragment). [source:swissprot;acc:q02127]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
831\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
t-cell activation wd repeat protein. [source:refseq;acc:nm\_139281]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4062.03\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4492.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10597\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
832\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit-like protein 12.3 (p205) (receptor of activated protein kinase c 1) (rack1) (receptor for activated c kinase). [source:swissprot;acc:p25388]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4489.72\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4965.35\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10594\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
833\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zuotin related factor-1 (m-phase phosphoprotein 11). [source:swissprot;acc:q99543]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
834\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp synthase alpha chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p25705]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5623.18\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6218.77\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10592\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
835\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s18a, mitochondrial precursor (mrp-s18-a) (mrps18a) (mrp-s18-3). [source:swissprot;acc:q9nvs2]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
836\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp-dependent rna helicase rok1; atp-dependent rna helicase. [source:refseq;acc:nm\_007010]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4049\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4477.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10581\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
837\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cirhin; testis expressed gene 292; cirrhosis, autosomal recessive 1a. [source:refseq;acc:nm\_032830]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4063.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4492.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10565\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
838\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
pbk1 protein. [source:sptrembl;acc:o76021]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4064.23\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4493.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10559\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
839\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
arginyl-trna synthetase-like; arginine-trna ligase. [source:refseq;acc:nm\_020320]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7093.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7842.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10556\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
840\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
poly (adp-ribose) glycohydrolase. [source:refseq;acc:nm\_003631]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5786.67\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6395.78\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10526\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
841\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mto1 protein homolog (cgi-02). [source:swissprot;acc:q9y2z2]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
842\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
loh1cr12. [source:refseq;acc:nm\_058169]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5195.48\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5741.63\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10512\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
843\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
unr protein. [source:swissprot;acc:o75534]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
844\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
preimplantation protein 3; likely ortholog of preimplantation protein 3. [source:refseq;acc:nm\_015387]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6276.97\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6934.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.1048\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
845\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dnaj homolog subfamily b member 11 precursor (er-associated dnaj protein 3) (erj3) (er-associated hsp40 co-chaperone) (hdj9) (pwp1- interacting protein 4). [source:swissprot;acc:q9ubs4]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
846\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
biotin--protein ligase (ec 6.3.4.-) (biotin apo-protein ligase) [includes: biotin--[methylmalonyl-coa-carboxyltransferase] ligase (ec 6.3.4.9); biotin--[propionyl-coa-carboxylase [atp-hydrolyzing]] ligase (ec 6.3.4.10) (holocarboxylase synthetase) (hcs); biotin--[methylcrotonoyl-coa-carboxylase] ligase (ec 6.3.4.11); biotin--[acetyl-coa-carboxylase] ligase (ec 6.3.4.15)]. [source:swissprot;acc:p50747]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5607.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6194.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10478\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
847\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic protein nck2 (nck adaptor protein 2) (sh2/sh3 adaptor protein nck-beta) (nck-2). [source:swissprot;acc:o43639]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6776.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7485.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10458\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
848\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
wd-repeat protein bing4. [source:swissprot;acc:o15213]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4066.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4491.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10453\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
849\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna damage binding protein 1 (damage-specific dna binding protein 1) (ddb p127 subunit) (ddba) (uv-damaged dna-binding protein 1) (uv-ddb 1) (xeroderma pigmentosum group e complementing protein) (xpce) (x- associated protein 1) (xap-1). [source:swissprot;acc:q16531]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6194.15\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6839.37\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10417\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
850\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
propionyl-coa carboxylase beta chain, mitochondrial precursor (ec 6.4.1.3) (pccase beta subunit) (propanoyl-coa:carbon dioxide ligase beta subunit). [source:swissprot;acc:p05166]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
851\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase ii, alpha chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19138]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4307.12\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4755.03\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10399\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
852\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase ii, alpha' chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19784]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
853\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
apoptosis antagonizing transcription factor. [source:refseq;acc:nm\_012138]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4078.45\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4502.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10393\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
854\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
uba/ubx 33.3 kda protein. [source:swissprot;acc:q04323]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6562.98\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
7242.37\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10352\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
855\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ero1-like. [source:refseq;acc:nm\_014584]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
856\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heparin sulfate n-deacetylase/n-sulfotransferase (ec 2.8.2.-) (n- hsst) (n-heparin sulfate sulfotransferase) (glucosaminyl n- deacetylase/n-sulfotransferase). [source:swissprot;acc:p52849]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5210.58\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5749.33\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.1034\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
857\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-deacetylase/n-sulfotransferase (heparan glucosaminyl) 3. [source:refseq;acc:nm\_004784]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
858\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-deacetylase/n-sulfotransferase 4. [source:refseq;acc:nm\_022569]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
859\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate n-deacetylase/n-sulfotransferase (ec 2.8.2.8) (n-hsst) (hsnst) ([heparan sulfate]-glucosamine n-sulfotransferase) (n-heparan sulfate sulfotransferase) (glucosaminyl n-deacetylase/n- sulfotransferase). [source:swissprot;acc:p52848]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
860\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein cdc27hs (cell division cycle protein 27 homolog) (h-nuc). [source:swissprot;acc:p30260]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
861\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
bloom's syndrome protein (ec 3.6.1.-) (recq protein-like 3) (dna helicase, recq-like, type 2). [source:swissprot;acc:p54132]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5734.15\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6326.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10329\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
862\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
probable ribosome biogenesis protein nep1 (c2f protein). [source:swissprot;acc:q92979]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4076.72\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4497.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10327\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
863\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
neurotrypsin precursor (ec 3.4.21.-) (motopsin) (leydin). [source:swissprot;acc:p56730]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5595.65\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6173.23\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.10322\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
864\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ring finger protein 44. [source:refseq;acc:nm\_014901]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
865\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol 3-kinase regulatory alpha subunit (pi3-kinase p85-alpha subunit) (ptdins-3-kinase p85-alpha) (pi3k). [source:swissprot;acc:p27986]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
866\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ring finger protein 38. [source:refseq;acc:nm\_022781]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
867\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol 3-kinase regulatory gamma subunit (pi3-kinase p85-gamma subunit) (ptdins-3-kinase p85-gamma) (p55pik). [source:swissprot;acc:q92569]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
868\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
sterol regulatory element binding protein cleavage-activating protein (srebp cleavage-activating protein) (scap). [source:swissprot;acc:q12770]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
869\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp synthase beta chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p06576]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
870\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol 3-kinase regulatory beta subunit (pi3-kinase p85-beta subunit) (ptdins-3-kinase p85-beta). [source:swissprot;acc:o00459]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
871\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein bap28. [source:swissprot;acc:q9h583]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3956.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4364.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10313\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
872\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
epididymal secretory protein e1 precursor (niemann-pick disease type c2 protein) (epi-1) (he1) (epididymal secretory protein 14.6) (esp14.6). [source:swissprot;acc:q15668]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6781.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7480.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1031\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
873\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 5 (tfar19 protein) (tf-1 cell apoptosis related gene-19 protein). [source:swissprot;acc:o14737]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4749.52\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5237.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1028\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
874\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ca2+-dependent endoplasmic reticulum nucleoside diphosphatase; apyrase; soluble calcium-activated nucleotidase scan-1. [source:refseq;acc:nm\_138793]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
9921.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10941.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10278\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
875\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
steroid hormone receptor err2 (estrogen-related receptor, beta) (err-beta) (estrogen receptor-like 2) (err beta-2). [source:swissprot;acc:o95718]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
10263.8\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11318.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10277\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
876\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
peroxisomal carnitine octanoyltransferase (ec 2.3.1.-) (cot). [source:swissprot;acc:q9ukg9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5644.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6223.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10249\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
877\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitotic spindle assembly checkpoint protein mad2b (mad2-like 2) (hrev7). [source:swissprot;acc:q9ui95]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5797.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6391.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10243\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/