Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 780 to 829 of 6456 in total 
Value Type: Ranked
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
390\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.7841\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
75.447\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.6629\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
391\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s16. [source:swissprot;acc:p17008]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.828\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
263.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09011\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.719\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.072\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.647\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
392\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l13a (23 kda highly basic protein). [source:swissprot;acc:p40429]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
263.615\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09008\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (rna) iii (dna directed) (62kd). [source:refseq;acc:nm\_006468]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
239.092\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.705\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.613\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
393\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerases iii 39 kda polypeptide (ec 2.7.7.6) (rna polymerase iii c39 subunit). [source:swissprot;acc:q9h1d9]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
238.921\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.327\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.406\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.719\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.072\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09005\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
394\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 1 (clh-17). [source:swissprot;acc:q00610]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.889\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.337\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidylpeptidase 9; dipeptidyl peptidase 9; dipeptidyl peptidase iv-related protein-2. [source:refseq;acc:nm\_139159]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
218.827\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
238.407\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08948\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
395\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidyl peptidase 8 isoform 2; dipeptidyl peptidase 8. [source:refseq;acc:nm\_017743]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin-like protein (phlp). [source:swissprot;acc:q13371]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.31\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
396\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative eukaryotic translation initiation factor 1a (eif-1a) (eif- 4c). [source:swissprot;acc:o75642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.801\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
262.34\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08945\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
replication protein a 70 kda dna-binding subunit (rp-a) (rf-a) (replication factor-a protein 1) (single-stranded dna-binding protein). [source:swissprot;acc:p27694]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
18.31\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
397\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
replication protein a 32 kda subunit (rp-a) (rf-a) (replication factor-a protein 2). [source:swissprot;acc:p15927]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, gamma subunit (tcp-1-gamma) (cct-gamma). [source:swissprot;acc:p49368]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
110.689\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
101.613\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08932\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
398\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
muscle-specific beta 1 integrin binding protein. [source:refseq;acc:nm\_014446]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
218.818\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
238.358\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0893\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin (phd) (33 kda phototransducing protein) (meka protein). [source:swissprot;acc:p20941]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.31\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
399\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 1 (clh-17). [source:swissprot;acc:q00610]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.889\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08821\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna repair protein rad52 homolog. [source:swissprot;acc:p43351]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.31\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
400\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
207.931\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.209\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.278\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin-like protein (phlp). [source:swissprot;acc:q13371]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
401\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mki67 (fha domain) interacting nucleolar phosphoprotein; nucleolar phosphoprotein nopp34; nucleolar protein interacting with the fha domain of pki-67. [source:refseq;acc:nm\_032390]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
254.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
236.224\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.21\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
replication protein a 70 kda dna-binding subunit (rp-a) (rf-a) (replication factor-a protein 1) (single-stranded dna-binding protein). [source:swissprot;acc:p27694]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
402\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
highly expressed in cancer, rich in leucine heptad repeats. [source:refseq;acc:nm\_006101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.802\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
249.983\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18.181\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
replication protein a 32 kda subunit (rp-a) (rf-a) (replication factor-a protein 2). [source:swissprot;acc:p15927]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
403\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-actin crosslinking factor 1, isoform 4. [source:swissprot;acc:q96pk2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.468\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
246.338\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.87\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin (phd) (33 kda phototransducing protein) (meka protein). [source:swissprot;acc:p20941]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
404\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kda bullous pemphigoid antigen) (bpa) (hemidesmosomal plaque protein) (dystonia musculorum protein) (fragment). [source:swissprot;acc:q03001]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.463\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
246.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.867\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna repair protein rad52 homolog. [source:swissprot;acc:p43351]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
405\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
207.931\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.209\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0879\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
gaba(a) receptor-associated protein; gaba(a)-receptor-associated protein. [source:refseq;acc:nm\_007278]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
65.4586\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
83.0461\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.5875\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
406\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
neuropilin- and tolloid-like protein 2 precursor. [source:refseq;acc:nm\_018092]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.558\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.634\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
244.304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08731\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
407\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s9, mitochondrial precursor (mrp-s9). [source:swissprot;acc:p82933]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
239.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.544\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08673\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuropilin- and tolloid-like protein 1 isoform 3 precursor. [source:refseq;acc:nm\_138966]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.558\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
408\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat-box-binding transcription factor (ccaat-binding factor) (cbf). [source:swissprot;acc:q03701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
255.112\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.804\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08649\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heterogenous nuclear ribonucleoprotein u (hnrnp u) (scaffold attachment factor a) (saf-a). [source:swissprot;acc:q00839]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.558\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
409\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna polymerase i associated factor 53. [source:refseq;acc:nm\_022490]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.045\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.874\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08641\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
runt-related transcription factor 2 (core-binding factor, alpha 1 subunit) (cbf-alpha 1) (acute myeloid leukemia 3 protein) (oncogene aml-3) (polyomavirus enhancer binding protein 2 alpha a subunit) (pebp2-alpha a) (pea2-alpha a) (sl3-3 enhancer factor 1 alpha a subunit) (sl3/akv core-binding factor alpha a subunit) (osteoblast- specific transcription factor 2) (osf-2). [source:swissprot;acc:q13950]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
17.558\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
410\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
e1b-55kda-associated protein 5 isoform a. [source:refseq;acc:nm\_007040]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p44 subunit (basic transcription factor 2 44 kda subunit) (btf2-p44) (general transcription factor iih polypeptide 2). [source:swissprot;acc:q13888]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0864\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
411\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l18. [source:swissprot;acc:q07020]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.558\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p62 subunit (basic transcription factor 62 kda subunit) (btf2-p62) (general transcription factor iih polypeptide 1). [source:swissprot;acc:p32780]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0864\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
412\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
251.926\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.547\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.379\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (ec 1.10.2.2) (rieske iron-sulfur protein) (risp). [source:swissprot;acc:p47985]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.788\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.416\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08567\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
413\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 40 kda polypeptide (ec 2.7.7.6) (rpa40) (rpa39). [source:swissprot;acc:o15160]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
240.913\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08525\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.202\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
205.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.302\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
414\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p60 subunit a 1. [source:refseq;acc:nm\_007044]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.431\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.238\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08522\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
max protein. [source:swissprot;acc:p25912]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.828\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.561\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17.267\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
415\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p80 subunit b 1; katanin (80 kda); katanin p80 (wd40-containing) subunit b 1. [source:refseq;acc:nm\_005886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.382\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.166\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08514\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/