Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2058 to 2107 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2058\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
sh3 domain-binding glutamic acid-rich-like protein 2 (fovea-associated sh3 domain binding protein). [source:swissprot;acc:q9ujc5]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
218.79\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
216.981\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00834\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2059\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear receptor coactivator 7; estrogen receptor associated protein 140 kda. [source:refseq;acc:nm\_181782]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2060\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj132f21.2 (contains a novel protein similar to the l82e from drosophila) (fragment). [source:sptrembl;acc:q9h125]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2061\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tbc1 domain family protein c22orf4-like (fragment). [source:swissprot;acc:q9nu19]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2062\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tbc1 domain family protein c22orf4. [source:swissprot;acc:q8wua7]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2063\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ornithine decarboxylase (ec 4.1.1.17) (odc). [source:swissprot;acc:p11926]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
207.638\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
205.923\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00833\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2064\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aminoadipate-semialdehyde synthase; lysine-ketoglutarate reductase /saccharopine dehydrogenase; lysine-2-oxoglutarate reductase; aminoadipic semialdehyde synthase. [source:refseq;acc:nm\_005763]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
207.655\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
205.939\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2065\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2 n (ec 6.3.2.19) (ubiquitin-protein ligase n) (ubiquitin carrier protein n) (ubc13) (bendless-like ubiquitin conjugating enzyme). [source:swissprot;acc:q16781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
214.328\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.561\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00831\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2066\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
proliferating cell nuclear antigen (pcna) (cyclin). [source:swissprot;acc:p12004]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
229.102\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00829\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2067\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenylosuccinate lyase (ec 4.3.2.2) (adenylosuccinase) (asl) (asase). [source:swissprot;acc:p30566]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
193.226\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.639\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00828\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2068\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
fas apoptotic inhibitory molecule. [source:refseq;acc:nm\_018147]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
220.8\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0082\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2069\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 1 (ec 2.7.1.-) (map kinase kinase 1) (mapkk 1) (erk activator kinase 1) (mapk/erk kinase 1) (mek1). [source:swissprot;acc:q02750]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
217.555\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.807\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0081\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2070\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rac gtpase activating protein 1; gtpase activating protein. [source:refseq;acc:nm\_013277]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.199\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.008\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2071\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
similar to kinase suppressor of ras (fragment). [source:sptrembl;acc:q8ivt5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
217.555\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
215.807\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2072\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 2 (ec 2.7.1.-) (map kinase kinase 2) (mapkk 2) (erk activator kinase 2) (mapk/erk kinase 2) (mek2). [source:swissprot;acc:p36507]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2073\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
topoisomerase-related function protein 4-2. [source:refseq;acc:nm\_022447]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
229.267\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.433\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00806\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2074\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna polymerase gamma subunit 1 (ec 2.7.7.7) (mitochondrial dna polymerase catalytic subunit) (polg-alpha). [source:swissprot;acc:p54098]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
216.324\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.599\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00804\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2075\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cd109; gov system alloantigens on platelets. [source:refseq;acc:nm\_133493]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
221.703\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
223.483\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00803\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2076\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
peptidyl-prolyl cis-trans isomerase nima-interacting 1 (ec 5.2.1.8) (rotamase pin1) (ppiase pin1). [source:swissprot;acc:q13526]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2077\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
iroquois-class homeodomain protein irx-4 (iroquois homeobox protein 4). [source:swissprot;acc:p78413]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2078\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
fidgetin-like 1. [source:refseq;acc:nm\_022116]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
215.511\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.814\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00794\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2079\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol-4-phosphate 3-kinase c2 domain-containing gamma polypeptide (ec 2.7.1.154) (phosphoinositide 3-kinase-c2-gamma) (ptdins-3-kinase c2 gamma) (pi3k-c2gamma). [source:swissprot;acc:o75747]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
215.967\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
214.28\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00787\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2080\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol-4-phosphate 3-kinase c2 domain-containing beta polypeptide (ec 2.7.1.154) (phosphoinositide 3-kinase-c2-beta) (ptdins-3-kinase c2 beta) (pi3k-c2beta) (c2-pi3k). [source:swissprot;acc:o00750]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2081\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dynamin 1-like protein isoform 3; dynamin-like protein. [source:refseq;acc:nm\_005690]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2082\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosphoinositide-3-kinase, class 2, alpha polypeptide; c2-containing phosphatidylinositol kinase. [source:refseq;acc:nm\_002645]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2083\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar protein sorting 16 (hvps16). [source:swissprot;acc:q9h269]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
215.258\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.579\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00786\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2084\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (ec 2.6.1.16) (hexosephosphate aminotransferase 1) (d-fructose-6- phosphate amidotransferase 1) (gfat 1) (gfat1). [source:swissprot;acc:q06210]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
222.548\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.293\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00784\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2085\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nad] subunit alpha, mitochondrial precursor (ec 1.1.1.41) (isocitric dehydrogenase) (nad+-specific icdh). [source:swissprot;acc:p50213]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
222.58\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
224.32\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00782\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2086\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nad] subunit beta, mitochondrial precursor (ec 1.1.1.41) (isocitric dehydrogenase) (nad+-specific icdh). [source:swissprot;acc:o43837]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2087\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nad] subunit gamma, mitochondrial precursor (ec 1.1.1.41) (isocitric dehydrogenase) (nad+-specific icdh). [source:swissprot;acc:p51553]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2088\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
maguk p55 subfamily member 3 (mpp3 protein) (discs, large homolog 3). [source:swissprot;acc:q13368]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.124\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.433\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00781\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2089\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
serologically defined colon cancer antigen 16. [source:refseq;acc:nm\_006649]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
215.144\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.479\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0078\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2090\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 (ec 2.6.1.16) (hexosephosphate aminotransferase 2) (d-fructose-6- phosphate amidotransferase 2) (gfat 2) (gfat2). [source:swissprot;acc:o94808]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
222.609\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.344\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00779\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2091\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna, u transporter 1; snurportin-1. [source:refseq;acc:nm\_005701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
211.679\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.052\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00775\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2092\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
evolutionarily conserved signaling intermediate in toll pathway; ecsit. [source:refseq;acc:nm\_016581]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
211.992\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.369\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00772\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2093\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ribokinase (ec 2.7.1.15). [source:swissprot;acc:q9h477]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
209.994\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
208.387\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00771\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2094\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
pms1 protein homolog 2 (dna mismatch repair protein pms2). [source:swissprot;acc:p54278]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
207.321\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
205.747\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00765\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2095\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (dna directed) sigma; topoisomerase-related function protein 4-1; polymerase (dna-directed) sigma. [source:refseq;acc:nm\_006999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
229.266\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00763\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2096\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
limkain beta 2. [source:refseq;acc:nm\_025140]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
217.723\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.089\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00756\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2097\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
delta-interacting protein a (hepatitis delta antigen interacting protein a). [source:swissprot;acc:q15834]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
214.979\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00745\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2098\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ret finger protein 2 (leukemia associated protein 5) (b-cell chronic lymphocytic leukemia tumor suppressor leu5) (putative tumor suppressor rfp2) (tripartite motif protein 13). [source:swissprot;acc:o60858]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
177.515\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
178.831\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00741\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2099\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3a. [source:swissprot;acc:p55854]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
211.71\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.27\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00737\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2100\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3b (sentrin 2) (hsmt3). [source:swissprot;acc:p55855]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
2101\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
acrc protein; putative nuclear protein. [source:refseq;acc:nm\_052957]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2102\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 5a (eif-5a) (eif-4d) (rev- binding factor). [source:swissprot;acc:p10159]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
208.727\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.263\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00736\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2103\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transketolase (ec 2.2.1.1) (tk). [source:swissprot;acc:p29401]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
214.666\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.236\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00731\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2104\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
thymidylate kinase (ec 2.7.4.9) (dtmp kinase). [source:swissprot;acc:p23919]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
209.328\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.813\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.00729\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
2105\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
eif-5a2 protein. [source:refseq;acc:nm\_020390]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
208.591\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.111\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2106\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
insulin gene enhancer protein isl-1 (islet-1). [source:swissprot;acc:p20663]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
197.489\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.061\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00728\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2107\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
lim domain only 7; zinc-finger domain-containing protein; lomp protein; f-box only protein 20; f-box protein fbx20. [source:refseq;acc:nm\_005358]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
216.23\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.801\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00727\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/