Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank description Gene Value Type Network Comparison Type Interaction Map Filtered green red network_comparison
Results: HTML CSV LaTeX
Showing element 551 to 600 of 19268 in total
Value Type: Measured

\def\wcA{0.11111111111111\textwidth}
\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
69\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
tubulointerstitial nephritis antigen. [source:refseq;acc:nm\_014464]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
129\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.82979\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 223. [source:swissprot;acc:q9uk11]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
1971.21\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2354.34\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.13\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
70\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
amp deaminase 2 (ec 3.5.4.6) (amp deaminase isoform l). [source:swissprot;acc:q01433]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10307.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6475.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.59177\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
beta-carotene dioxygenase 2; putative b,b-carotene-9',10'-dioxygenase. [source:refseq;acc:nm\_031938]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
139\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
570\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
431\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
importin alpha-2 subunit (karyopherin alpha-2 subunit) (srp1-alpha) (rag cohort protein 1). [source:swissprot;acc:p52292]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
1068\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
607\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.75947\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 1 (larp) (serologically defined breast cancer antigen ny-br- 24). [source:swissprot;acc:q8wyj6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
11515.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10499\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1016.8\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, epsilon isoform (pp2a, b subunit, b' epsilon isoform) (pp2a, b subunit, b56 epsilon isoform) (pp2a, b subunit, pr61 epsilon isoform) (pp2a, b subunit, r5 epsilon isoform). [source:swissprot;acc:q16537]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
13995.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3742.8\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
305.886\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
167.73\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.82368\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
y+l amino acid transporter 1 (y(+)l-type amino acid transporter 1) (y+lat-1) (y+lat1) (monocyte amino acid permease 2) (mop-2). [source:swissprot;acc:q9um01]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger imprinted 3. [source:swissprot;acc:q96pe6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1971.17\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2354.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.13\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
71\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cystine/glutamate transporter (amino acid transport system xc-) (xct) (calcium channel blocker resistance protein ccbr1). [source:swissprot;acc:q9upy5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein cgi-126 (protein hspc155). [source:swissprot;acc:q9y3c8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
6352.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5339.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1012.9\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, alpha isoform (pp2a, subunit b, b-alpha isoform) (pp2a, subunit b, b55-alpha isoform) (pp2a, subunit b, pr55-alpha isoform) (pp2a, subunit b, r2-alpha isoform). [source:swissprot;acc:q00007]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2945.26\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4556.78\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.54716\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, alpha isoform (pp2a, b subunit, b' alpha isoform) (pp2a, b subunit, b56 alpha isoform) (pp2a, b subunit, pr61 alpha isoform) (pp2a, b subunit, r5 alpha isoform). [source:swissprot;acc:q15172]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
13995.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3742.8\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
tubby protein homolog. [source:swissprot;acc:p50607]\vspace{3pt}}&&&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
4228.27\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3797.57\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
430.7\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin protein ligase. [source:refseq;acc:nm\_130466]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
352.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
620\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.75762\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 233. [source:refseq;acc:nm\_181756]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1970.95\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2354.06\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.11\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zona pellucida sperm-binding protein 3 precursor (zona pellucida glycoprotein zp3) (zona pellucida protein c) (sperm receptor) (zp3a/zp3b). [source:swissprot;acc:p21754]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
150.001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
270.432\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.80287\vspace{3pt}}\\\cline{1-2}\cline{4-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
72\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l21. [source:swissprot;acc:p46778]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
992.083\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
572\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.73441\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
b-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (p94) (v-raf murine sarcoma viral oncogene homolog b1). [source:swissprot;acc:p15056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13977.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17710.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3733.2\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
b24o18.3 (pom121 membrane glycoprotein (rat homolog)-like 2). [source:sptrembl;acc:q96kw2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
150.995\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
271.129\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.79562\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
rab gdp dissociation inhibitor alpha (rab gdi alpha) (gdi-1) (xap-4) (oligophrenin 2). [source:swissprot;acc:p31150]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1106.88\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
679.449\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
427.431\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine-protein kinase mak (ec 2.7.1.-) (male germ cell- associated kinase). [source:swissprot;acc:p20794]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10633\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
9631.47\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1001.53\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 7 (cationic amino acid transporter, y+ system), member 6. [source:refseq;acc:nm\_003983]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
uncharacterized hematopoietic stem/progenitor cells protein mds026. [source:sptrembl;acc:q9nz48]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2945.28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4556.79\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.54715\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 334. [source:swissprot;acc:q9hcz1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1970.91\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2354.02\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.11\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
73\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4b (eif-4b). [source:swissprot;acc:p23588]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
intestinal cell kinase isoform a; mak-related kinase; serine/threonine protein kinase. [source:refseq;acc:nm\_014920]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
10621.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
9623.55\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
997.75\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
krab zinc finger protein hzf26 (fragment). [source:sptrembl;acc:q9bze6]\vspace{3pt}}&&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1970.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2353.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.1\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase inhibitor 2 (ipp-2). [source:swissprot;acc:p41236]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
37.693\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
65.2968\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.73233\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
sal-like protein 4 (zinc finger protein sall4). [source:swissprot;acc:q9ujq4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
2389.69\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1965.47\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
424.22\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, beta isoform (pp2a, subunit b, b-beta isoform) (pp2a, subunit b, b55- beta isoform) (pp2a, subunit b, pr55-beta isoform) (pp2a, subunit b, r2-beta isoform). [source:swissprot;acc:q00005]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2945.38\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4556.83\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.54711\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase pp1-gamma catalytic subunit (ec 3.1.3.16) (pp-1g). [source:swissprot;acc:p36873]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
18560.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22268.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3708.4\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
soluble liver antigen/liver pancreas antigen. [source:refseq;acc:nm\_153825]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
385.626\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
688.436\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.78524\vspace{3pt}}\\\cline{1-2}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
74\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
arf gtpase-activating protein. [source:refseq;acc:nm\_133446]\vspace{3pt}}&&&&\parbox{\wcF}{\vspace{3pt}\noindent
37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
66\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.78378\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
b(0,+)-type amino acid transporter 1 (b(0,+)at) (glycoprotein- associated amino acid transporter b0,+at1). [source:swissprot;acc:p82251]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
bone morphogenetic protein 8 precursor (bmp-8) (osteogenic protein 2) (op-2). [source:swissprot;acc:p34820]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
859.34\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
501.151\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.71473\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogenin-2 (ec 2.4.1.186) (gn-2) (gn2). [source:swissprot;acc:o15488]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
14688.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14267.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
421.3\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3690.3\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma antigen, family d, 4 isoform 1; mage1 protein; mage-e1 protein; maged4 protein. [source:refseq;acc:nm\_030801]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10318.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11285.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
966.8\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, gamma isoform (pp2a, subunit b, b-gamma isoform) (pp2a, subunit b, b55-gamma isoform) (pp2a, subunit b, pr55-gamma isoform) (pp2a, subunit b, r2-gamma isoform) (imypno1). [source:swissprot;acc:q9y2t4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2945.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4556.99\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.54694\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 195. [source:swissprot;acc:o14628]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1970.76\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2353.86\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.1\vspace{3pt}}\\\cline{1-2}\cline{4-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
75\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l21. [source:swissprot;acc:p46778]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
992.083\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
572\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
420.083\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
hepatocellular carcinoma-associated protein hca3. [source:refseq;acc:nm\_138703]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10318.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11285.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
966.8\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-b4 (hox-2f) (hox-2.6). [source:swissprot;acc:p17483]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3690.3\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 18 kda subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-18 kda) (ci-18 kda) (complex i- aqdq) (ci-aqdq). [source:swissprot;acc:o43181]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
2907.43\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1920.75\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.5137\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
925.298\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1586.07\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.71412\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 7 (cdc10 protein homolog). [source:swissprot;acc:q16181]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12942.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11616\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11418\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
up-regulated in liver cancer 1; similar to development- and differentiation-enhancing factor 2. [source:refseq;acc:nm\_017707]\vspace{3pt}}&&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
66\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.78378\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 230 (zinc finger protein fdzf2). [source:swissprot;acc:q9uie0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
1970.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2353.79\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.09\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/