Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Value Type description Network Comparison Type Interaction Map red Filtered green network_comparison
Results: HTML CSV LaTeX Showing element 501 to 550 of 29840 in total 
Interaction Map: High confidence

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{12}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
32\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i), alpha-2 subunit (adenylate cyclase-inhibiting g alpha protein). [source:swissprot;acc:p04899]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
267.142\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
336.074\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
68.932\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
importin 9. [source:refseq;acc:nm\_018085]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
13292.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8691.76\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.52929\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, gamma isoform (pp2a, subunit b, b-gamma isoform) (pp2a, subunit b, b55-gamma isoform) (pp2a, subunit b, pr55-gamma isoform) (pp2a, subunit b, r2-gamma isoform) (imypno1). [source:swissprot;acc:q9y2t4]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
187.462\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
243.673\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.29985\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 10 (syn10). [source:swissprot;acc:o60499]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13884.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19014.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5130.2\vspace{3pt}}\\\cline{2-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
beta-arrestin 1 (arrestin, beta 1). [source:swissprot;acc:p49407]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9924.76\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
25146.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.53372\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85915\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
phenylethanolamine n-methyltransferase (ec 2.1.1.28) (pnmtase) (noradrenaline n-methyltransferase). [source:swissprot;acc:p11086]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
76.8994\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.57302\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
16.8159\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
sh3-containing grb2-like protein 1 (sh3 domain protein 2b) (extra eleven-nineteen leukemia fusion gene) (een) (een fusion partner of mll). [source:swissprot;acc:q99961]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19892.6\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
27221.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7328.6\vspace{3pt}}\\\cline{2-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [source:swissprot;acc:q15485]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.65937\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
gbp protein isoform a. [source:refseq;acc:nm\_017870]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23.9771\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
42.4773\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18.5002\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
9.43398\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9.43398\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin protein ligase. [source:refseq;acc:nm\_130466]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
24.0391\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
11.258\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.13529\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
33\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-11 subunit. [source:swissprot;acc:p50152]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1835.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
896.972\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.04611\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
lim domain binding 1; carboxy terminal lim domain protein 2; lim domain-binding factor-1. [source:refseq;acc:nm\_003893]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
12.6208\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
39.8063\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.15402\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 9 (mage-9 antigen). [source:swissprot;acc:p43362]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
protein cgi-147. [source:swissprot;acc:q9y3e5]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
8396.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
9192.38\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
796.26\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i), alpha-1 subunit (adenylate cyclase-inhibiting g alpha protein). [source:swissprot;acc:p04898]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
267.144\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
336.073\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
68.929\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
nucleosome assembly protein 1-like 4 (nucleosome assembly protein 2) (nap2). [source:swissprot;acc:q99733]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
13292.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8691.76\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.52929\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, beta isoform (pp2a, subunit a, pr65-beta isoform) (pp2a, subunit a, r1-beta isoform). [source:swissprot;acc:p30154]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
188.688\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
242.742\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.28647\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
similar to lysozyme c-1 (1,4-beta-n-acylmuramidase c, ec 3.2.1.17). [source:refseq;acc:nm\_032517]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
15264\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
20387\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5123\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ba271b5.1 (similar to ribosomal protein s7). [source:sptrembl;acc:q9h1s9]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
29812\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
36822.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7010.7\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
beta-carotene dioxygenase 2; putative b,b-carotene-9',10'-dioxygenase. [source:refseq;acc:nm\_031938]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
76.8994\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4.57302\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
16.8159\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85915\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
spermatogenesis associated 6. [source:refseq;acc:nm\_019073]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
9924.76\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
25146.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.53372\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
12.3693\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
25.7294\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.0801\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
nucleoporin nup43 (p42). [source:swissprot;acc:q8nfh3]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.6393\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
70.9983\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9.359\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
protein kinase, interferon-inducible double stranded rna dependent activator; protein activator of the interferon-induced protein kinase. [source:refseq;acc:nm\_003690]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
25.6987\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
43.561\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
17.8623\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [source:refseq;acc:nm\_030949]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.65937\vspace{3pt}}\\\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
34\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
acrc protein; putative nuclear protein. [source:refseq;acc:nm\_052957]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4131.06\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
3340.03\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
791.03\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
glucosamine-6-phosphate isomerase (ec 3.5.99.6) (glucosamine-6- phosphate deaminase) (gnpda) (glcn6p deaminase) (oscillin). [source:swissprot;acc:p46926]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
143\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
47\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.04255\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(y), alpha subunit (alpha-11). [source:swissprot;acc:p29992]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1836.71\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
907.546\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.02382\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 8 (mage-8 antigen). [source:swissprot;acc:p43361]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
11543\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6812\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4731\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(k), alpha subunit (g(i) alpha-3). [source:swissprot;acc:p08754]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
267.144\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
336.073\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
68.929\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
microtubule-associated protein, rp/eb family, member 2; t-cell activation protein, eb1 family; apc-binding protein eb1. [source:refseq;acc:nm\_014268]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
11284\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
17173.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.52196\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, alpha isoform (pp2a, subunit a, pr65-alpha isoform) (pp2a, subunit a, r1-alpha isoform) (medium tumor antigen-associated 61 kda protein). [source:swissprot;acc:p30153]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
189.07\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
242.453\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.28235\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
amp deaminase 2 (ec 3.5.4.6) (amp deaminase isoform l). [source:swissprot;acc:q01433]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
9924.76\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
25146.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.53372\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
coatomer beta' subunit (beta'-coat protein) (beta'-cop) (p102). [source:swissprot;acc:p35606]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
79383.4\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
72701\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6682.4\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
lim domain binding 1; carboxy terminal lim domain protein 2; lim domain-binding factor-1. [source:refseq;acc:nm\_003893]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
0.0435834\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
0.697197\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
15.9968\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85915\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
gaba-a receptor-associated protein. [source:sptrembl;acc:q9by60]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
140.508\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
122.878\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
17.63\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(y), alpha subunit (alpha-11). [source:swissprot;acc:p29992]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.2812\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
24.3678\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.65305\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
phenylethanolamine n-methyltransferase (ec 2.1.1.28) (pnmtase) (noradrenaline n-methyltransferase). [source:swissprot;acc:p11086]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
23.8747\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
11.7898\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.02503\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3.16228\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
12.49\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9.32772\vspace{3pt}}\\\cline{1-5}\cline{7-8}
\multirow{6}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
35\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
459.5\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
1377\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.99674\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
filamin a (alpha-filamin) (filamin 1) (endothelial actin-binding protein) (abp-280) (nonmuscle filamin). [source:swissprot;acc:p21333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1603\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
898\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
705\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(q), alpha subunit. [source:swissprot;acc:p50148]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.71\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
907.564\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.02378\vspace{3pt}}\\\cline{3-5}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [source:swissprot;acc:o60732]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{2-3}\cline{5-5}\cline{7-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit 5 (transducin beta chain 5). [source:swissprot;acc:o14775]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
267.636\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
335.359\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67.723\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
importin 9. [source:refseq;acc:nm\_018085]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
13292.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8691.76\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4600.44\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/